miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 5' -54.8 NC_003521.1 + 101373 0.68 0.947991
Target:  5'- cCCGGGUGCGcGAgcCGUCGCGcCGCuuGAc -3'
miRNA:   3'- -GGCCUACGC-CU--GCAGUGUaGUGcgCU- -5'
14065 5' -54.8 NC_003521.1 + 90076 0.69 0.919386
Target:  5'- gCGG--GCGGGCG-CGCAcgCGCGCGGu -3'
miRNA:   3'- gGCCuaCGCCUGCaGUGUa-GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 119641 0.69 0.929802
Target:  5'- aCUGGccGCGGGCGUC-CGUCucCGCu- -3'
miRNA:   3'- -GGCCuaCGCCUGCAGuGUAGu-GCGcu -5'
14065 5' -54.8 NC_003521.1 + 61799 0.69 0.934678
Target:  5'- gUGGAUGCGGAaaagACGUUGCGUGAu -3'
miRNA:   3'- gGCCUACGCCUgcagUGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 163827 0.69 0.939334
Target:  5'- cCUGGAcgGCGG-CGUCACGUCcgaagcCGUGGc -3'
miRNA:   3'- -GGCCUa-CGCCuGCAGUGUAGu-----GCGCU- -5'
14065 5' -54.8 NC_003521.1 + 216822 0.68 0.943772
Target:  5'- gCCGGAUGgcgcgcaGGAgGUCGCAgCcCGCGGc -3'
miRNA:   3'- -GGCCUACg------CCUgCAGUGUaGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 186974 0.68 0.943772
Target:  5'- gCCGGccGaGGACG-C-CGUCGCGCGGa -3'
miRNA:   3'- -GGCCuaCgCCUGCaGuGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 36882 0.68 0.947991
Target:  5'- gCGGGUGaccacguaCGGGCacaagCGCAUCACGCGc -3'
miRNA:   3'- gGCCUAC--------GCCUGca---GUGUAGUGCGCu -5'
14065 5' -54.8 NC_003521.1 + 81932 0.68 0.947991
Target:  5'- uUGGAgcggGCGGugGUCAcCGUCACcauGCa- -3'
miRNA:   3'- gGCCUa---CGCCugCAGU-GUAGUG---CGcu -5'
14065 5' -54.8 NC_003521.1 + 40892 0.69 0.919386
Target:  5'- aCCGGG-GCGGGgGUCAguUUAauaGCGAg -3'
miRNA:   3'- -GGCCUaCGCCUgCAGUguAGUg--CGCU- -5'
14065 5' -54.8 NC_003521.1 + 7441 0.7 0.913848
Target:  5'- aCGGAcGCGG-CG-CACAgcacCACGCGGg -3'
miRNA:   3'- gGCCUaCGCCuGCaGUGUa---GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 30710 0.7 0.90809
Target:  5'- gCGGcgccGCGGGC-UCAUGUCGCGUGAc -3'
miRNA:   3'- gGCCua--CGCCUGcAGUGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 73569 0.73 0.789026
Target:  5'- gCCGuGGUGCGGGCG-CugGUCAUGaaCGAg -3'
miRNA:   3'- -GGC-CUACGCCUGCaGugUAGUGC--GCU- -5'
14065 5' -54.8 NC_003521.1 + 35797 0.72 0.797739
Target:  5'- aCGGAUccauCGGGCGUCGCggCACGCc- -3'
miRNA:   3'- gGCCUAc---GCCUGCAGUGuaGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 93939 0.72 0.797739
Target:  5'- uCCgGGAUGCaGACGgacguggcucUCACAUC-CGCGAg -3'
miRNA:   3'- -GG-CCUACGcCUGC----------AGUGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 221822 0.72 0.823016
Target:  5'- gCGGG-GCGGGCGUgucucccuCGUCGCGCGGc -3'
miRNA:   3'- gGCCUaCGCCUGCAgu------GUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 206722 0.72 0.831131
Target:  5'- gCGGGcgGCGGGC-UCcUAUCGCGCGAu -3'
miRNA:   3'- gGCCUa-CGCCUGcAGuGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 31186 0.72 0.838292
Target:  5'- -gGGAUGCGGugGaUCACGUCGagaaaguCGCa- -3'
miRNA:   3'- ggCCUACGCCugC-AGUGUAGU-------GCGcu -5'
14065 5' -54.8 NC_003521.1 + 193280 0.71 0.876089
Target:  5'- gCGGGUGCcgggacGGGCGUCGgaGUCgGCGCGGg -3'
miRNA:   3'- gGCCUACG------CCUGCAGUg-UAG-UGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 60705 0.7 0.88952
Target:  5'- cCCGGggGCGGcgcGgGUCGCAcCACGCc- -3'
miRNA:   3'- -GGCCuaCGCC---UgCAGUGUaGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.