miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 5' -54.8 NC_003521.1 + 4852 0.69 0.929802
Target:  5'- ---aGUGCGGGCGUCgACGUCGaauCGCGGc -3'
miRNA:   3'- ggccUACGCCUGCAG-UGUAGU---GCGCU- -5'
14065 5' -54.8 NC_003521.1 + 7441 0.7 0.913848
Target:  5'- aCGGAcGCGG-CG-CACAgcacCACGCGGg -3'
miRNA:   3'- gGCCUaCGCCuGCaGUGUa---GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 7452 0.66 0.983007
Target:  5'- uCCGGAUcCcGGCGaCGCAUC-CGCGGa -3'
miRNA:   3'- -GGCCUAcGcCUGCaGUGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 16852 0.67 0.971702
Target:  5'- gCCGGcgcagGCGGACGUCuacgacguGCGUUcccCGCGGc -3'
miRNA:   3'- -GGCCua---CGCCUGCAG--------UGUAGu--GCGCU- -5'
14065 5' -54.8 NC_003521.1 + 17198 0.66 0.981078
Target:  5'- gUCGGGgcuaugGCGaGagaagaGCGUCGcCGUCGCGCGGu -3'
miRNA:   3'- -GGCCUa-----CGC-C------UGCAGU-GUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 17775 0.68 0.951996
Target:  5'- gCCGGcgGCGGACG----GUCAgGUGAa -3'
miRNA:   3'- -GGCCuaCGCCUGCagugUAGUgCGCU- -5'
14065 5' -54.8 NC_003521.1 + 26719 0.67 0.976735
Target:  5'- gCGGAuguacugcucacUGCGGAUGUCGCAa-GCGUa- -3'
miRNA:   3'- gGCCU------------ACGCCUGCAGUGUagUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 27418 0.67 0.974308
Target:  5'- gCGGGUGCuGaccaGCGUCuucuuCAUCACGCu- -3'
miRNA:   3'- gGCCUACGcC----UGCAGu----GUAGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 30710 0.7 0.90809
Target:  5'- gCGGcgccGCGGGC-UCAUGUCGCGUGAc -3'
miRNA:   3'- gGCCua--CGCCUGcAGUGUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 31186 0.72 0.838292
Target:  5'- -gGGAUGCGGugGaUCACGUCGagaaaguCGCa- -3'
miRNA:   3'- ggCCUACGCCugC-AGUGUAGU-------GCGcu -5'
14065 5' -54.8 NC_003521.1 + 35563 0.7 0.90809
Target:  5'- aCgGGAUGUGGAUGUCA---CugGUGAa -3'
miRNA:   3'- -GgCCUACGCCUGCAGUguaGugCGCU- -5'
14065 5' -54.8 NC_003521.1 + 35797 0.72 0.797739
Target:  5'- aCGGAUccauCGGGCGUCGCggCACGCc- -3'
miRNA:   3'- gGCCUAc---GCCUGCAGUGuaGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 36882 0.68 0.947991
Target:  5'- gCGGGUGaccacguaCGGGCacaagCGCAUCACGCGc -3'
miRNA:   3'- gGCCUAC--------GCCUGca---GUGUAGUGCGCu -5'
14065 5' -54.8 NC_003521.1 + 36976 0.66 0.983007
Target:  5'- gCGGGUGCucGGCGgcgACAUC-CGCGAc -3'
miRNA:   3'- gGCCUACGc-CUGCag-UGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 37327 0.68 0.959372
Target:  5'- uCUGGGUGgGGGCgGUCGCGgaggacgCACGUa- -3'
miRNA:   3'- -GGCCUACgCCUG-CAGUGUa------GUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 40892 0.69 0.919386
Target:  5'- aCCGGG-GCGGGgGUCAguUUAauaGCGAg -3'
miRNA:   3'- -GGCCUaCGCCUgCAGUguAGUg--CGCU- -5'
14065 5' -54.8 NC_003521.1 + 43840 0.68 0.951996
Target:  5'- gCCGGccGCGGGCccGUCACAg-GCGCc- -3'
miRNA:   3'- -GGCCuaCGCCUG--CAGUGUagUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 48772 0.67 0.976735
Target:  5'- aCCGcc-GCGGACGcCGCGUCugcCGCGc -3'
miRNA:   3'- -GGCcuaCGCCUGCaGUGUAGu--GCGCu -5'
14065 5' -54.8 NC_003521.1 + 60705 0.7 0.88952
Target:  5'- cCCGGggGCGGcgcGgGUCGCAcCACGCc- -3'
miRNA:   3'- -GGCCuaCGCC---UgCAGUGUaGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 61799 0.69 0.934678
Target:  5'- gUGGAUGCGGAaaagACGUUGCGUGAu -3'
miRNA:   3'- gGCCUACGCCUgcagUGUAGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.