Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14066 | 5' | -63.2 | NC_003521.1 | + | 198584 | 0.7 | 0.483952 |
Target: 5'- cGGCGGGCUagaCGcCGAGCUGagguugugGUGCGa -3' miRNA: 3'- uCCGCCCGGg--GCcGCUCGAUa-------CACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 155332 | 0.7 | 0.483952 |
Target: 5'- -cGCGGGUCCCGGCGGGg---GcGCGg -3' miRNA: 3'- ucCGCCCGGGGCCGCUCgauaCaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 187252 | 0.69 | 0.492816 |
Target: 5'- gAGGC-GGCCCCGGgaGAGCUAgagagacGCGa -3' miRNA: 3'- -UCCGcCCGGGGCCg-CUCGAUaca----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 178800 | 0.69 | 0.510763 |
Target: 5'- cGGGCGaGGCaugCCCGGCGGGCgg-GU-CGa -3' miRNA: 3'- -UCCGC-CCG---GGGCCGCUCGauaCAcGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 240117 | 0.69 | 0.510763 |
Target: 5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgGaaaGCGc -3' miRNA: 3'- -UCCGCCCG----------GGGCCGCUCGauaCa--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 101841 | 0.69 | 0.519837 |
Target: 5'- uGGCGGGCUCCGG---GUUGUGgaugGCGg -3' miRNA: 3'- uCCGCCCGGGGCCgcuCGAUACa---CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 197855 | 0.69 | 0.535407 |
Target: 5'- cGGUGGGCgCCGGCGggucgcgcucgcugGGCUGcagGCGg -3' miRNA: 3'- uCCGCCCGgGGCCGC--------------UCGAUacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 40969 | 0.69 | 0.538172 |
Target: 5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3' miRNA: 3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 648 | 0.69 | 0.538172 |
Target: 5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3' miRNA: 3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 17 | 0.68 | 0.547422 |
Target: 5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3' miRNA: 3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 240566 | 0.68 | 0.547422 |
Target: 5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3' miRNA: 3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 40339 | 0.68 | 0.547422 |
Target: 5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3' miRNA: 3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 168816 | 0.68 | 0.55579 |
Target: 5'- cGGCgcauccugaagcuGGGCCCCaGCGAGCUGc--GCGu -3' miRNA: 3'- uCCG-------------CCCGGGGcCGCUCGAUacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 40308 | 0.68 | 0.575452 |
Target: 5'- uGGCGuugaGCCCCuuGGCcAGCUcgGUGCGc -3' miRNA: 3'- uCCGCc---CGGGG--CCGcUCGAuaCACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 77749 | 0.68 | 0.594322 |
Target: 5'- cGGGCcGGCCUCGGCGuGGCUcuucacGUaGUGCc -3' miRNA: 3'- -UCCGcCCGGGGCCGC-UCGA------UA-CACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 98882 | 0.68 | 0.600951 |
Target: 5'- cAGGUGGGCgCCCacGCGcugcacggucaggcGGCUGUaGUGCGu -3' miRNA: 3'- -UCCGCCCG-GGGc-CGC--------------UCGAUA-CACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 197489 | 0.68 | 0.603795 |
Target: 5'- cGGCGGGCCggaCGGCGcggAGCaGUGUuCGu -3' miRNA: 3'- uCCGCCCGGg--GCCGC---UCGaUACAcGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 98472 | 0.68 | 0.603795 |
Target: 5'- cGGCGgcGGCCgCGGCG-GCcGUGgcgGCGg -3' miRNA: 3'- uCCGC--CCGGgGCCGCuCGaUACa--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 168549 | 0.67 | 0.613286 |
Target: 5'- cGGCGgcGGCgCUGGCGGGCUgcggguaagGUG-GCGg -3' miRNA: 3'- uCCGC--CCGgGGCCGCUCGA---------UACaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 101272 | 0.67 | 0.62279 |
Target: 5'- gAGGCuGGCCCagaGcGCGuAGCUGUgcucgGUGCGc -3' miRNA: 3'- -UCCGcCCGGGg--C-CGC-UCGAUA-----CACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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