Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14066 | 5' | -63.2 | NC_003521.1 | + | 146795 | 1.07 | 0.001406 |
Target: 5'- aAGGCGGGCCCCGGCGAGCUAUGUGCGu -3' miRNA: 3'- -UCCGCCCGGGGCCGCUCGAUACACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 87743 | 0.74 | 0.274407 |
Target: 5'- uGGUGGGCCCCGGCccGGGCcccg-GCGg -3' miRNA: 3'- uCCGCCCGGGGCCG--CUCGauacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 38230 | 0.73 | 0.312428 |
Target: 5'- aGGGC-GGCCUCGGCGGGCgg-G-GCGg -3' miRNA: 3'- -UCCGcCCGGGGCCGCUCGauaCaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 238458 | 0.73 | 0.312428 |
Target: 5'- aGGGC-GGCCUCGGCGGGCgg-G-GCGg -3' miRNA: 3'- -UCCGcCCGGGGCCGCUCGauaCaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 210025 | 0.72 | 0.339923 |
Target: 5'- cGGCGGGCCCuCGGUGcGCUAcc-GCGc -3' miRNA: 3'- uCCGCCCGGG-GCCGCuCGAUacaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 177736 | 0.72 | 0.354315 |
Target: 5'- aGGGCGGGCagcgcgCCGGCGcAGCUGUacgggGUcGCGg -3' miRNA: 3'- -UCCGCCCGg-----GGCCGC-UCGAUA-----CA-CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 98259 | 0.71 | 0.400011 |
Target: 5'- cGGCGGGCa-CGGCGAGCc-UG-GCGg -3' miRNA: 3'- uCCGCCCGggGCCGCUCGauACaCGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 163642 | 0.71 | 0.407985 |
Target: 5'- cGuGCGGGCCUCGGUGcGCgucucgGUGcUGCGg -3' miRNA: 3'- uC-CGCCCGGGGCCGCuCGa-----UAC-ACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 59613 | 0.7 | 0.43917 |
Target: 5'- uGGCGgcGGCCCCGGCGgcgaccgcGGCUcgcaggcguugGUGCGg -3' miRNA: 3'- uCCGC--CCGGGGCCGC--------UCGAua---------CACGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 122520 | 0.7 | 0.440849 |
Target: 5'- cGGCGGGCaggCCGGCG-GCggugGUaGUGCu -3' miRNA: 3'- uCCGCCCGg--GGCCGCuCGa---UA-CACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 101184 | 0.7 | 0.444218 |
Target: 5'- cGGCGuccGCgCCCGGCGGGCggaucuugaccgagAUGUGCa -3' miRNA: 3'- uCCGCc--CG-GGGCCGCUCGa-------------UACACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 112452 | 0.7 | 0.449298 |
Target: 5'- cAGGC-GGCCCUGGUGGGCgcgcccgGCGg -3' miRNA: 3'- -UCCGcCCGGGGCCGCUCGauaca--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 87091 | 0.7 | 0.449298 |
Target: 5'- uGGUGGGCCaCGGUGGGCaucGUGCc -3' miRNA: 3'- uCCGCCCGGgGCCGCUCGauaCACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 36690 | 0.7 | 0.449298 |
Target: 5'- gAGGcCGGGCUCCGGCGccuggcccgAGCagGUGgagGCGc -3' miRNA: 3'- -UCC-GCCCGGGGCCGC---------UCGa-UACa--CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 86697 | 0.7 | 0.45441 |
Target: 5'- uGGCGGGCCgCGGCG-GCgacgacgagGCGg -3' miRNA: 3'- uCCGCCCGGgGCCGCuCGauaca----CGC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 223388 | 0.7 | 0.466459 |
Target: 5'- -cGCGGcGCCCCGacGCGGGCcGUGUGgCGc -3' miRNA: 3'- ucCGCC-CGGGGC--CGCUCGaUACAC-GC- -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 213960 | 0.7 | 0.466459 |
Target: 5'- cGGGUGGGCgCCGGCucGGGCc--GUGCu -3' miRNA: 3'- -UCCGCCCGgGGCCG--CUCGauaCACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 101017 | 0.7 | 0.466459 |
Target: 5'- gGGGCGcGUCCUGGCGGGCacgcccGUGCa -3' miRNA: 3'- -UCCGCcCGGGGCCGCUCGaua---CACGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 67574 | 0.7 | 0.475165 |
Target: 5'- cGGCGGGCCCCG-CGGGCcagaGUcGCc -3' miRNA: 3'- uCCGCCCGGGGCcGCUCGaua-CA-CGc -5' |
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14066 | 5' | -63.2 | NC_003521.1 | + | 39890 | 0.7 | 0.483952 |
Target: 5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgaaaGCGc -3' miRNA: 3'- -UCCGCCCG----------GGGCCGCUCGauaca-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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