miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 5' -63.2 NC_003521.1 + 126777 0.66 0.669326
Target:  5'- cGGCaGGCCCUGGCGcugcgcgugguccAGCUccGcGCGc -3'
miRNA:   3'- uCCGcCCGGGGCCGC-------------UCGAuaCaCGC- -5'
14066 5' -63.2 NC_003521.1 + 40308 0.68 0.575452
Target:  5'- uGGCGuugaGCCCCuuGGCcAGCUcgGUGCGc -3'
miRNA:   3'- uCCGCc---CGGGG--CCGcUCGAuaCACGC- -5'
14066 5' -63.2 NC_003521.1 + 197489 0.68 0.603795
Target:  5'- cGGCGGGCCggaCGGCGcggAGCaGUGUuCGu -3'
miRNA:   3'- uCCGCCCGGg--GCCGC---UCGaUACAcGC- -5'
14066 5' -63.2 NC_003521.1 + 168549 0.67 0.613286
Target:  5'- cGGCGgcGGCgCUGGCGGGCUgcggguaagGUG-GCGg -3'
miRNA:   3'- uCCGC--CCGgGGCCGCUCGA---------UACaCGC- -5'
14066 5' -63.2 NC_003521.1 + 120938 0.67 0.62279
Target:  5'- cGGCGgcGGCUCCGGCGAGggGcagGggGCGg -3'
miRNA:   3'- uCCGC--CCGGGGCCGCUCgaUa--Ca-CGC- -5'
14066 5' -63.2 NC_003521.1 + 101272 0.67 0.62279
Target:  5'- gAGGCuGGCCCagaGcGCGuAGCUGUgcucgGUGCGc -3'
miRNA:   3'- -UCCGcCCGGGg--C-CGC-UCGAUA-----CACGC- -5'
14066 5' -63.2 NC_003521.1 + 150662 0.67 0.640858
Target:  5'- aAGGCGGcuCUCCGGCGGcggcgccgcugcuGCUggGUGCu -3'
miRNA:   3'- -UCCGCCc-GGGGCCGCU-------------CGAuaCACGc -5'
14066 5' -63.2 NC_003521.1 + 224019 0.67 0.651312
Target:  5'- cGGCGGGCCCggcggucggGGCGGGCgccGUcGCc -3'
miRNA:   3'- uCCGCCCGGGg--------CCGCUCGauaCA-CGc -5'
14066 5' -63.2 NC_003521.1 + 77730 0.67 0.660802
Target:  5'- cGGC-GGCCUCGGUGGGCg----GCGu -3'
miRNA:   3'- uCCGcCCGGGGCCGCUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 240566 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 17 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 648 0.69 0.538172
Target:  5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3'
miRNA:   3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 59613 0.7 0.43917
Target:  5'- uGGCGgcGGCCCCGGCGgcgaccgcGGCUcgcaggcguugGUGCGg -3'
miRNA:   3'- uCCGC--CCGGGGCCGC--------UCGAua---------CACGC- -5'
14066 5' -63.2 NC_003521.1 + 101184 0.7 0.444218
Target:  5'- cGGCGuccGCgCCCGGCGGGCggaucuugaccgagAUGUGCa -3'
miRNA:   3'- uCCGCc--CG-GGGCCGCUCGa-------------UACACGc -5'
14066 5' -63.2 NC_003521.1 + 112452 0.7 0.449298
Target:  5'- cAGGC-GGCCCUGGUGGGCgcgcccgGCGg -3'
miRNA:   3'- -UCCGcCCGGGGCCGCUCGauaca--CGC- -5'
14066 5' -63.2 NC_003521.1 + 101017 0.7 0.466459
Target:  5'- gGGGCGcGUCCUGGCGGGCacgcccGUGCa -3'
miRNA:   3'- -UCCGCcCGGGGCCGCUCGaua---CACGc -5'
14066 5' -63.2 NC_003521.1 + 213960 0.7 0.466459
Target:  5'- cGGGUGGGCgCCGGCucGGGCc--GUGCu -3'
miRNA:   3'- -UCCGCCCGgGGCCG--CUCGauaCACGc -5'
14066 5' -63.2 NC_003521.1 + 223388 0.7 0.466459
Target:  5'- -cGCGGcGCCCCGacGCGGGCcGUGUGgCGc -3'
miRNA:   3'- ucCGCC-CGGGGC--CGCUCGaUACAC-GC- -5'
14066 5' -63.2 NC_003521.1 + 67574 0.7 0.475165
Target:  5'- cGGCGGGCCCCG-CGGGCcagaGUcGCc -3'
miRNA:   3'- uCCGCCCGGGGCcGCUCGaua-CA-CGc -5'
14066 5' -63.2 NC_003521.1 + 240117 0.69 0.510763
Target:  5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgGaaaGCGc -3'
miRNA:   3'- -UCCGCCCG----------GGGCCGCUCGauaCa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.