miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 5' -63.2 NC_003521.1 + 17 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 648 0.69 0.538172
Target:  5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3'
miRNA:   3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 19126 0.67 0.641809
Target:  5'- uGGCGGGCCgCCGGUGuaccAGUcgGaGUGCc -3'
miRNA:   3'- uCCGCCCGG-GGCCGC----UCGa-UaCACGc -5'
14066 5' -63.2 NC_003521.1 + 19340 0.66 0.717079
Target:  5'- cGG-GGaGCUCCGGCGAGgaGcccucGUGCGa -3'
miRNA:   3'- uCCgCC-CGGGGCCGCUCgaUa----CACGC- -5'
14066 5' -63.2 NC_003521.1 + 29411 0.66 0.707814
Target:  5'- gAGGacagucCGGGCCCCGGUGAcaGCUAcaaccaGCGc -3'
miRNA:   3'- -UCC------GCCCGGGGCCGCU--CGAUaca---CGC- -5'
14066 5' -63.2 NC_003521.1 + 36690 0.7 0.449298
Target:  5'- gAGGcCGGGCUCCGGCGccuggcccgAGCagGUGgagGCGc -3'
miRNA:   3'- -UCC-GCCCGGGGCCGC---------UCGa-UACa--CGC- -5'
14066 5' -63.2 NC_003521.1 + 38230 0.73 0.312428
Target:  5'- aGGGC-GGCCUCGGCGGGCgg-G-GCGg -3'
miRNA:   3'- -UCCGcCCGGGGCCGCUCGauaCaCGC- -5'
14066 5' -63.2 NC_003521.1 + 39890 0.7 0.483952
Target:  5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgaaaGCGc -3'
miRNA:   3'- -UCCGCCCG----------GGGCCGCUCGauaca-CGC- -5'
14066 5' -63.2 NC_003521.1 + 40308 0.68 0.575452
Target:  5'- uGGCGuugaGCCCCuuGGCcAGCUcgGUGCGc -3'
miRNA:   3'- uCCGCc---CGGGG--CCGcUCGAuaCACGC- -5'
14066 5' -63.2 NC_003521.1 + 40339 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 40969 0.69 0.538172
Target:  5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3'
miRNA:   3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 46592 0.67 0.632299
Target:  5'- cAGGCGGGaCCUGGCG-GCUuucUGU-CGg -3'
miRNA:   3'- -UCCGCCCgGGGCCGCuCGAu--ACAcGC- -5'
14066 5' -63.2 NC_003521.1 + 53388 0.67 0.641809
Target:  5'- aGGaGCaGGCCgCGGCGAGCaggggAUG-GCGc -3'
miRNA:   3'- -UC-CGcCCGGgGCCGCUCGa----UACaCGC- -5'
14066 5' -63.2 NC_003521.1 + 54531 0.66 0.686306
Target:  5'- cGGCgccgcuGGGgCCCGGCGGcuuuuugacguugcGCUugacgcggGUGUGCGg -3'
miRNA:   3'- uCCG------CCCgGGGCCGCU--------------CGA--------UACACGC- -5'
14066 5' -63.2 NC_003521.1 + 59613 0.7 0.43917
Target:  5'- uGGCGgcGGCCCCGGCGgcgaccgcGGCUcgcaggcguugGUGCGg -3'
miRNA:   3'- uCCGC--CCGGGGCCGC--------UCGAua---------CACGC- -5'
14066 5' -63.2 NC_003521.1 + 67574 0.7 0.475165
Target:  5'- cGGCGGGCCCCG-CGGGCcagaGUcGCc -3'
miRNA:   3'- uCCGCCCGGGGCcGCUCGaua-CA-CGc -5'
14066 5' -63.2 NC_003521.1 + 77730 0.67 0.660802
Target:  5'- cGGC-GGCCUCGGUGGGCg----GCGu -3'
miRNA:   3'- uCCGcCCGGGGCCGCUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 77749 0.68 0.594322
Target:  5'- cGGGCcGGCCUCGGCGuGGCUcuucacGUaGUGCc -3'
miRNA:   3'- -UCCGcCCGGGGCCGC-UCGA------UA-CACGc -5'
14066 5' -63.2 NC_003521.1 + 86697 0.7 0.45441
Target:  5'- uGGCGGGCCgCGGCG-GCgacgacgagGCGg -3'
miRNA:   3'- uCCGCCCGGgGCCGCuCGauaca----CGC- -5'
14066 5' -63.2 NC_003521.1 + 87091 0.7 0.449298
Target:  5'- uGGUGGGCCaCGGUGGGCaucGUGCc -3'
miRNA:   3'- uCCGCCCGGgGCCGCUCGauaCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.