miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 3' -55.9 NC_003521.1 + 144934 1.1 0.004281
Target:  5'- gACGAUCAUUCCCCGCCGUCUCUCCACg -3'
miRNA:   3'- -UGCUAGUAAGGGGCGGCAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 236512 0.78 0.391008
Target:  5'- gACGGUCGagcCCCCGCCGUCcCUCUGCc -3'
miRNA:   3'- -UGCUAGUaa-GGGGCGGCAGaGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 123868 0.75 0.572956
Target:  5'- ---cUCGUUUCCCGCCGuUCUCUCCuCg -3'
miRNA:   3'- ugcuAGUAAGGGGCGGC-AGAGAGGuG- -5'
14067 3' -55.9 NC_003521.1 + 188003 0.73 0.652128
Target:  5'- uCGAUC--UCCaCCGCCGUCUCcUCGCa -3'
miRNA:   3'- uGCUAGuaAGG-GGCGGCAGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 95983 0.73 0.691581
Target:  5'- aGCGAUC--UCCgCUGUCGUCUC-CCGCg -3'
miRNA:   3'- -UGCUAGuaAGG-GGCGGCAGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 212730 0.72 0.711059
Target:  5'- gGCGAgcgccugcUCGgcUUCCCCGCCGUCgucCUCCc- -3'
miRNA:   3'- -UGCU--------AGU--AAGGGGCGGCAGa--GAGGug -5'
14067 3' -55.9 NC_003521.1 + 233660 0.72 0.739783
Target:  5'- -gGAUCAaaaguuguccucUUCCUCGUCGUCgucCUCCGCg -3'
miRNA:   3'- ugCUAGU------------AAGGGGCGGCAGa--GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 56693 0.71 0.803322
Target:  5'- cACGAUCAa--CaCGCCGUCUCggCCGCg -3'
miRNA:   3'- -UGCUAGUaagGgGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 47299 0.7 0.844503
Target:  5'- -aGGUCcgUCCgauCCGUCGUCUCagCCGCu -3'
miRNA:   3'- ugCUAGuaAGG---GGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 171069 0.69 0.852222
Target:  5'- cCGAUCAUgcacuugugCCaCCGCCGcCUCcCCGCc -3'
miRNA:   3'- uGCUAGUAa--------GG-GGCGGCaGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 174983 0.69 0.859753
Target:  5'- cAUGAgucacuaaGUUCCacaGCUGUCUCUCCACc -3'
miRNA:   3'- -UGCUag------UAAGGgg-CGGCAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 129738 0.69 0.859753
Target:  5'- cGCGAgcgCG-UCCgCGCCGUCUUcgCCGCc -3'
miRNA:   3'- -UGCUa--GUaAGGgGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 213092 0.69 0.874229
Target:  5'- gGCGcUCGUUCUCCuCUGUCUUUCUGCc -3'
miRNA:   3'- -UGCuAGUAAGGGGcGGCAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 117461 0.69 0.881164
Target:  5'- ----cCAgcCCCCGCCGcCUCcUCCACa -3'
miRNA:   3'- ugcuaGUaaGGGGCGGCaGAG-AGGUG- -5'
14067 3' -55.9 NC_003521.1 + 188304 0.68 0.894405
Target:  5'- gGCGGcUC-UUCUUCGCCGcgCUCUCUACc -3'
miRNA:   3'- -UGCU-AGuAAGGGGCGGCa-GAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 222737 0.68 0.900704
Target:  5'- ---cUCcgUCCCCgcgGCCGUCgUCUCCAg -3'
miRNA:   3'- ugcuAGuaAGGGG---CGGCAG-AGAGGUg -5'
14067 3' -55.9 NC_003521.1 + 110923 0.68 0.906784
Target:  5'- gGCGcgCGgccgCCCCGUCGUCgucCUCCu- -3'
miRNA:   3'- -UGCuaGUaa--GGGGCGGCAGa--GAGGug -5'
14067 3' -55.9 NC_003521.1 + 154115 0.68 0.906784
Target:  5'- uCGAUCAccgCCUCGUCGUCgccgCCGCg -3'
miRNA:   3'- uGCUAGUaa-GGGGCGGCAGaga-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 5990 0.67 0.928876
Target:  5'- cACGcuAUCGccgUCCCCGUCGUCgUCUUCGu -3'
miRNA:   3'- -UGC--UAGUa--AGGGGCGGCAG-AGAGGUg -5'
14067 3' -55.9 NC_003521.1 + 220657 0.67 0.928876
Target:  5'- cGCGGaCcgUCgUCGCCGUCgUCUCgGCa -3'
miRNA:   3'- -UGCUaGuaAGgGGCGGCAG-AGAGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.