miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 3' -55.9 NC_003521.1 + 5990 0.67 0.928876
Target:  5'- cACGcuAUCGccgUCCCCGUCGUCgUCUUCGu -3'
miRNA:   3'- -UGC--UAGUa--AGGGGCGGCAG-AGAGGUg -5'
14067 3' -55.9 NC_003521.1 + 16871 0.66 0.962385
Target:  5'- uACGAcgugCGUUCCCCgcgGCCGcCUCgacccccucggCCGCg -3'
miRNA:   3'- -UGCUa---GUAAGGGG---CGGCaGAGa----------GGUG- -5'
14067 3' -55.9 NC_003521.1 + 21437 0.66 0.965614
Target:  5'- --cGUCGUgCCCguCGCCuGUCUCUUCGCg -3'
miRNA:   3'- ugcUAGUAaGGG--GCGG-CAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 22113 0.66 0.965614
Target:  5'- uCGccCGccgCCgCCGCCGUCUCcUCCGCc -3'
miRNA:   3'- uGCuaGUaa-GG-GGCGGCAGAG-AGGUG- -5'
14067 3' -55.9 NC_003521.1 + 24523 0.67 0.947381
Target:  5'- cCGA-CAUcacCCCCGCCaacGUCguccgCUCCACg -3'
miRNA:   3'- uGCUaGUAa--GGGGCGG---CAGa----GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 26681 0.66 0.955309
Target:  5'- cGCGGc---UCCCUGCUGcUCUaCUCCACg -3'
miRNA:   3'- -UGCUaguaAGGGGCGGC-AGA-GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 32479 0.66 0.954175
Target:  5'- uACGAguUCAUUCCCCauaagGCCacgguaacggaacaGUCUCUCaGCg -3'
miRNA:   3'- -UGCU--AGUAAGGGG-----CGG--------------CAGAGAGgUG- -5'
14067 3' -55.9 NC_003521.1 + 47299 0.7 0.844503
Target:  5'- -aGGUCcgUCCgauCCGUCGUCUCagCCGCu -3'
miRNA:   3'- ugCUAGuaAGG---GGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 56693 0.71 0.803322
Target:  5'- cACGAUCAa--CaCGCCGUCUCggCCGCg -3'
miRNA:   3'- -UGCUAGUaagGgGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 66780 0.66 0.954175
Target:  5'- gGCGAUCGcagcccacgugcgggCCaCCGCCGUCuccUCUCC-Ca -3'
miRNA:   3'- -UGCUAGUaa-------------GG-GGCGGCAG---AGAGGuG- -5'
14067 3' -55.9 NC_003521.1 + 71818 0.66 0.955309
Target:  5'- -aGAUCGUgccggCCCCGUCGcccgcCUC-CCGCg -3'
miRNA:   3'- ugCUAGUAa----GGGGCGGCa----GAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 72319 0.66 0.965614
Target:  5'- gGCGucgCcgUCCuCCGCCuccGUCUCgCCGCc -3'
miRNA:   3'- -UGCua-GuaAGG-GGCGG---CAGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 72434 0.67 0.928876
Target:  5'- gGCGAg---UCCUCGCCGUCgUCgUCGCg -3'
miRNA:   3'- -UGCUaguaAGGGGCGGCAG-AGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 91114 0.66 0.962385
Target:  5'- cCGGUCGgggaUUCCCCGgcaucCCGUaauaCUCCGCg -3'
miRNA:   3'- uGCUAGU----AAGGGGC-----GGCAga--GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 92172 0.66 0.958952
Target:  5'- gGCGGcCA-UCCCCGCCGagCUCggggCCGu -3'
miRNA:   3'- -UGCUaGUaAGGGGCGGCa-GAGa---GGUg -5'
14067 3' -55.9 NC_003521.1 + 94156 0.67 0.947381
Target:  5'- uGCGGUCGgcUUCgUUGCCGUC-CUCCuCg -3'
miRNA:   3'- -UGCUAGU--AAGgGGCGGCAGaGAGGuG- -5'
14067 3' -55.9 NC_003521.1 + 94538 0.66 0.951453
Target:  5'- gACGGaCGUUCCCUuuGCCGUCg--UCGCg -3'
miRNA:   3'- -UGCUaGUAAGGGG--CGGCAGagaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 95983 0.73 0.691581
Target:  5'- aGCGAUC--UCCgCUGUCGUCUC-CCGCg -3'
miRNA:   3'- -UGCUAGuaAGG-GGCGGCAGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 110923 0.68 0.906784
Target:  5'- gGCGcgCGgccgCCCCGUCGUCgucCUCCu- -3'
miRNA:   3'- -UGCuaGUaa--GGGGCGGCAGa--GAGGug -5'
14067 3' -55.9 NC_003521.1 + 117461 0.69 0.881164
Target:  5'- ----cCAgcCCCCGCCGcCUCcUCCACa -3'
miRNA:   3'- ugcuaGUaaGGGGCGGCaGAG-AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.