miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 3' -55.9 NC_003521.1 + 123868 0.75 0.572956
Target:  5'- ---cUCGUUUCCCGCCGuUCUCUCCuCg -3'
miRNA:   3'- ugcuAGUAAGGGGCGGC-AGAGAGGuG- -5'
14067 3' -55.9 NC_003521.1 + 191574 0.67 0.947381
Target:  5'- cACG-UCAUUUcacaCCCGCCccUUUCUCCACu -3'
miRNA:   3'- -UGCuAGUAAG----GGGCGGc-AGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 204006 0.66 0.951453
Target:  5'- gACGAgcUCAUgCCcgaguCCGCCGUCcgcgagcggCUCCGCa -3'
miRNA:   3'- -UGCU--AGUAaGG-----GGCGGCAGa--------GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 94538 0.66 0.951453
Target:  5'- gACGGaCGUUCCCUuuGCCGUCg--UCGCg -3'
miRNA:   3'- -UGCUaGUAAGGGG--CGGCAGagaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 124461 0.66 0.955309
Target:  5'- gGCGGcacgCGUUCgCCGCCGcgCUCgcgguccgUCCGCg -3'
miRNA:   3'- -UGCUa---GUAAGgGGCGGCa-GAG--------AGGUG- -5'
14067 3' -55.9 NC_003521.1 + 16871 0.66 0.962385
Target:  5'- uACGAcgugCGUUCCCCgcgGCCGcCUCgacccccucggCCGCg -3'
miRNA:   3'- -UGCUa---GUAAGGGG---CGGCaGAGa----------GGUG- -5'
14067 3' -55.9 NC_003521.1 + 91114 0.66 0.962385
Target:  5'- cCGGUCGgggaUUCCCCGgcaucCCGUaauaCUCCGCg -3'
miRNA:   3'- uGCUAGU----AAGGGGC-----GGCAga--GAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 163599 0.66 0.968642
Target:  5'- --uGUCGUcCCCCGuaGgcugCUCUCCGCu -3'
miRNA:   3'- ugcUAGUAaGGGGCggCa---GAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 211228 0.66 0.968642
Target:  5'- aAUGGUUAUaagCUCCGCCauGUCUCUgUCACa -3'
miRNA:   3'- -UGCUAGUAa--GGGGCGG--CAGAGA-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 220657 0.67 0.928876
Target:  5'- cGCGGaCcgUCgUCGCCGUCgUCUCgGCa -3'
miRNA:   3'- -UGCUaGuaAGgGGCGGCAG-AGAGgUG- -5'
14067 3' -55.9 NC_003521.1 + 72434 0.67 0.928876
Target:  5'- gGCGAg---UCCUCGCCGUCgUCgUCGCg -3'
miRNA:   3'- -UGCUaguaAGGGGCGGCAG-AGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 188003 0.73 0.652128
Target:  5'- uCGAUC--UCCaCCGCCGUCUCcUCGCa -3'
miRNA:   3'- uGCUAGuaAGG-GGCGGCAGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 95983 0.73 0.691581
Target:  5'- aGCGAUC--UCCgCUGUCGUCUC-CCGCg -3'
miRNA:   3'- -UGCUAGuaAGG-GGCGGCAGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 171069 0.69 0.852222
Target:  5'- cCGAUCAUgcacuugugCCaCCGCCGcCUCcCCGCc -3'
miRNA:   3'- uGCUAGUAa--------GG-GGCGGCaGAGaGGUG- -5'
14067 3' -55.9 NC_003521.1 + 129738 0.69 0.859753
Target:  5'- cGCGAgcgCG-UCCgCGCCGUCUUcgCCGCc -3'
miRNA:   3'- -UGCUa--GUaAGGgGCGGCAGAGa-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 174983 0.69 0.859753
Target:  5'- cAUGAgucacuaaGUUCCacaGCUGUCUCUCCACc -3'
miRNA:   3'- -UGCUag------UAAGGgg-CGGCAGAGAGGUG- -5'
14067 3' -55.9 NC_003521.1 + 117461 0.69 0.881164
Target:  5'- ----cCAgcCCCCGCCGcCUCcUCCACa -3'
miRNA:   3'- ugcuaGUaaGGGGCGGCaGAG-AGGUG- -5'
14067 3' -55.9 NC_003521.1 + 154115 0.68 0.906784
Target:  5'- uCGAUCAccgCCUCGUCGUCgccgCCGCg -3'
miRNA:   3'- uGCUAGUaa-GGGGCGGCAGaga-GGUG- -5'
14067 3' -55.9 NC_003521.1 + 5990 0.67 0.928876
Target:  5'- cACGcuAUCGccgUCCCCGUCGUCgUCUUCGu -3'
miRNA:   3'- -UGC--UAGUa--AGGGGCGGCAG-AGAGGUg -5'
14067 3' -55.9 NC_003521.1 + 21437 0.66 0.965614
Target:  5'- --cGUCGUgCCCguCGCCuGUCUCUUCGCg -3'
miRNA:   3'- ugcUAGUAaGGG--GCGG-CAGAGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.