miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 5' -57 NC_003521.1 + 144970 1.07 0.005699
Target:  5'- aCAGAGGAGGAGAGGACGGACGACGUAu -3'
miRNA:   3'- -GUCUCCUCCUCUCCUGCCUGCUGCAU- -5'
14067 5' -57 NC_003521.1 + 16592 0.8 0.291024
Target:  5'- -cGGGGAGGAcgGAGGAUGGugGugGUGu -3'
miRNA:   3'- guCUCCUCCU--CUCCUGCCugCugCAU- -5'
14067 5' -57 NC_003521.1 + 90926 0.8 0.297611
Target:  5'- uCGGAGGAGGGGuGGgcGCGGGCGAUGg- -3'
miRNA:   3'- -GUCUCCUCCUCuCC--UGCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 44944 0.79 0.318065
Target:  5'- aAGAGGAcGGGGAGGAaGGGCGGCGa- -3'
miRNA:   3'- gUCUCCU-CCUCUCCUgCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 87367 0.79 0.331557
Target:  5'- aGGAGGAGGccgagguGGAGGACGaGGCGGCGg- -3'
miRNA:   3'- gUCUCCUCC-------UCUCCUGC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 165249 0.77 0.385631
Target:  5'- aAGAGGAGGAcGAGGACaGGAgGGCGc- -3'
miRNA:   3'- gUCUCCUCCU-CUCCUG-CCUgCUGCau -5'
14067 5' -57 NC_003521.1 + 90879 0.77 0.410165
Target:  5'- aGGGGGAcGGGGAGGG-GGACGACGa- -3'
miRNA:   3'- gUCUCCU-CCUCUCCUgCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 163997 0.76 0.435647
Target:  5'- aAGAGGAGGaAGAGGAgGGA-GAUGUGg -3'
miRNA:   3'- gUCUCCUCC-UCUCCUgCCUgCUGCAU- -5'
14067 5' -57 NC_003521.1 + 129887 0.76 0.444343
Target:  5'- -cGGGGAGGAgGAGGACG-ACGACGg- -3'
miRNA:   3'- guCUCCUCCU-CUCCUGCcUGCUGCau -5'
14067 5' -57 NC_003521.1 + 28073 0.76 0.46202
Target:  5'- aGGAGGGGG-GAGGACG-ACGGCGg- -3'
miRNA:   3'- gUCUCCUCCuCUCCUGCcUGCUGCau -5'
14067 5' -57 NC_003521.1 + 16897 0.76 0.46202
Target:  5'- uGGAGGAGGuGGAGGacgaggagGCGGACGAUGa- -3'
miRNA:   3'- gUCUCCUCC-UCUCC--------UGCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 33606 0.76 0.470997
Target:  5'- gCAcGGGAGGAGAGGAacCGGAgGACGa- -3'
miRNA:   3'- -GUcUCCUCCUCUCCU--GCCUgCUGCau -5'
14067 5' -57 NC_003521.1 + 197285 0.75 0.507745
Target:  5'- -cGGGGAGcGGGAGGGCGGcuCGACGg- -3'
miRNA:   3'- guCUCCUC-CUCUCCUGCCu-GCUGCau -5'
14067 5' -57 NC_003521.1 + 4235 0.75 0.516183
Target:  5'- gGGAGGAGGAccgagacggggagGAGGACgagaaGGACGGCGg- -3'
miRNA:   3'- gUCUCCUCCU-------------CUCCUG-----CCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 169673 0.75 0.517124
Target:  5'- gCAGAGGAGGcaacagcagaGGAGGAgGcGGCGACGa- -3'
miRNA:   3'- -GUCUCCUCC----------UCUCCUgC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 168503 0.75 0.526572
Target:  5'- gAGAcGGAGGcGGAGGACGG-CGACGc- -3'
miRNA:   3'- gUCU-CCUCC-UCUCCUGCCuGCUGCau -5'
14067 5' -57 NC_003521.1 + 196695 0.74 0.536083
Target:  5'- uCGGAGGAGGAGcAGcGACGGcCGACu-- -3'
miRNA:   3'- -GUCUCCUCCUC-UC-CUGCCuGCUGcau -5'
14067 5' -57 NC_003521.1 + 43674 0.74 0.544694
Target:  5'- gAGAGGAGGAGcagcagcAGGAgGaGACGACGa- -3'
miRNA:   3'- gUCUCCUCCUC-------UCCUgC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 19090 0.74 0.555279
Target:  5'- -uGAGGAGGAgGGGGACGGggagggagACGACGc- -3'
miRNA:   3'- guCUCCUCCU-CUCCUGCC--------UGCUGCau -5'
14067 5' -57 NC_003521.1 + 98239 0.74 0.564953
Target:  5'- -cGGGGAGGcGGGGGCGGccACGGCGg- -3'
miRNA:   3'- guCUCCUCCuCUCCUGCC--UGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.