miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 5' -57 NC_003521.1 + 235594 0.69 0.836269
Target:  5'- gGGAGGAcGAGAGG-CGGACucgGGCGg- -3'
miRNA:   3'- gUCUCCUcCUCUCCuGCCUG---CUGCau -5'
14067 5' -57 NC_003521.1 + 135797 0.73 0.633556
Target:  5'- gGGAGGAGGAGcAGcGGCGGagggaggcgcgGCGACGa- -3'
miRNA:   3'- gUCUCCUCCUC-UC-CUGCC-----------UGCUGCau -5'
14067 5' -57 NC_003521.1 + 117943 0.72 0.653248
Target:  5'- gGGAGGAGGAGAGcaucauCGcGGCGGCGg- -3'
miRNA:   3'- gUCUCCUCCUCUCcu----GC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 81573 0.71 0.73455
Target:  5'- aCAGGGGucuucuuGGAGAGGAagguggccgucaucuUGGACGAgGUGa -3'
miRNA:   3'- -GUCUCCu------CCUCUCCU---------------GCCUGCUgCAU- -5'
14067 5' -57 NC_003521.1 + 130809 0.71 0.749525
Target:  5'- aGGAGGAGGAGGGGGaacaGGAgGAg--- -3'
miRNA:   3'- gUCUCCUCCUCUCCUg---CCUgCUgcau -5'
14067 5' -57 NC_003521.1 + 164827 0.7 0.758762
Target:  5'- gCGGGGGAGGAGGaaccGGCGGcCGGCGc- -3'
miRNA:   3'- -GUCUCCUCCUCUc---CUGCCuGCUGCau -5'
14067 5' -57 NC_003521.1 + 164028 0.7 0.767896
Target:  5'- uGGAGGAGGAGcugGGGAauUGGugGugGc- -3'
miRNA:   3'- gUCUCCUCCUC---UCCU--GCCugCugCau -5'
14067 5' -57 NC_003521.1 + 66277 0.7 0.776917
Target:  5'- gCAGcAGGAGG-GAGG-CGGACuGGCGg- -3'
miRNA:   3'- -GUC-UCCUCCuCUCCuGCCUG-CUGCau -5'
14067 5' -57 NC_003521.1 + 218703 0.69 0.811722
Target:  5'- aAGGcGGAGGAGAcGGCGGcgGCGGCGg- -3'
miRNA:   3'- gUCU-CCUCCUCUcCUGCC--UGCUGCau -5'
14067 5' -57 NC_003521.1 + 36159 0.73 0.613859
Target:  5'- -cGAGGAGGAGGacacccCGGACGGCGUGc -3'
miRNA:   3'- guCUCCUCCUCUccu---GCCUGCUGCAU- -5'
14067 5' -57 NC_003521.1 + 139236 0.73 0.594214
Target:  5'- aGGAGGAGaAGAGGGuCGGACaGACGg- -3'
miRNA:   3'- gUCUCCUCcUCUCCU-GCCUG-CUGCau -5'
14067 5' -57 NC_003521.1 + 113374 0.74 0.584426
Target:  5'- -cGAGGAGGAGGGuuacGGCGGACGccGCGg- -3'
miRNA:   3'- guCUCCUCCUCUC----CUGCCUGC--UGCau -5'
14067 5' -57 NC_003521.1 + 44944 0.79 0.318065
Target:  5'- aAGAGGAcGGGGAGGAaGGGCGGCGa- -3'
miRNA:   3'- gUCUCCU-CCUCUCCUgCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 87367 0.79 0.331557
Target:  5'- aGGAGGAGGccgagguGGAGGACGaGGCGGCGg- -3'
miRNA:   3'- gUCUCCUCC-------UCUCCUGC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 129887 0.76 0.444343
Target:  5'- -cGGGGAGGAgGAGGACG-ACGACGg- -3'
miRNA:   3'- guCUCCUCCU-CUCCUGCcUGCUGCau -5'
14067 5' -57 NC_003521.1 + 28073 0.76 0.46202
Target:  5'- aGGAGGGGG-GAGGACG-ACGGCGg- -3'
miRNA:   3'- gUCUCCUCCuCUCCUGCcUGCUGCau -5'
14067 5' -57 NC_003521.1 + 4235 0.75 0.516183
Target:  5'- gGGAGGAGGAccgagacggggagGAGGACgagaaGGACGGCGg- -3'
miRNA:   3'- gUCUCCUCCU-------------CUCCUG-----CCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 168503 0.75 0.526572
Target:  5'- gAGAcGGAGGcGGAGGACGG-CGACGc- -3'
miRNA:   3'- gUCU-CCUCC-UCUCCUGCCuGCUGCau -5'
14067 5' -57 NC_003521.1 + 196695 0.74 0.536083
Target:  5'- uCGGAGGAGGAGcAGcGACGGcCGACu-- -3'
miRNA:   3'- -GUCUCCUCCUC-UC-CUGCCuGCUGcau -5'
14067 5' -57 NC_003521.1 + 43674 0.74 0.544694
Target:  5'- gAGAGGAGGAGcagcagcAGGAgGaGACGACGa- -3'
miRNA:   3'- gUCUCCUCCUC-------UCCUgC-CUGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.