miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 5' -57 NC_003521.1 + 638 0.67 0.906071
Target:  5'- --aAGGAGGAGAaaGGACGGGCcccgggggGACGc- -3'
miRNA:   3'- gucUCCUCCUCU--CCUGCCUG--------CUGCau -5'
14067 5' -57 NC_003521.1 + 4235 0.75 0.516183
Target:  5'- gGGAGGAGGAccgagacggggagGAGGACgagaaGGACGGCGg- -3'
miRNA:   3'- gUCUCCUCCU-------------CUCCUG-----CCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 7727 0.7 0.803228
Target:  5'- --uGGGuGGGGAGGGCGGcgcgaGCGGCGg- -3'
miRNA:   3'- gucUCCuCCUCUCCUGCC-----UGCUGCau -5'
14067 5' -57 NC_003521.1 + 7846 0.66 0.93307
Target:  5'- aAGAcGAGGGGGuGGCGGACGGCc-- -3'
miRNA:   3'- gUCUcCUCCUCUcCUGCCUGCUGcau -5'
14067 5' -57 NC_003521.1 + 13668 0.69 0.811722
Target:  5'- aAGAGGcucGGAGAGGgugGCGG-CGACGa- -3'
miRNA:   3'- gUCUCCu--CCUCUCC---UGCCuGCUGCau -5'
14067 5' -57 NC_003521.1 + 13860 0.68 0.880561
Target:  5'- ---cGGAGGGGAGGAUGGGgGugaACGUu -3'
miRNA:   3'- gucuCCUCCUCUCCUGCCUgC---UGCAu -5'
14067 5' -57 NC_003521.1 + 16592 0.8 0.291024
Target:  5'- -cGGGGAGGAcgGAGGAUGGugGugGUGu -3'
miRNA:   3'- guCUCCUCCU--CUCCUGCCugCugCAU- -5'
14067 5' -57 NC_003521.1 + 16761 0.69 0.820065
Target:  5'- cCGGAGGAcgaGGAGGGuGACgaagagucccagGGGCGACGg- -3'
miRNA:   3'- -GUCUCCU---CCUCUC-CUG------------CCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 16897 0.76 0.46202
Target:  5'- uGGAGGAGGuGGAGGacgaggagGCGGACGAUGa- -3'
miRNA:   3'- gUCUCCUCC-UCUCC--------UGCCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 18975 0.71 0.730772
Target:  5'- aGGAGGGGGucGAGGACGcGccgcGCGACGa- -3'
miRNA:   3'- gUCUCCUCCu-CUCCUGC-C----UGCUGCau -5'
14067 5' -57 NC_003521.1 + 19090 0.74 0.555279
Target:  5'- -uGAGGAGGAgGGGGACGGggagggagACGACGc- -3'
miRNA:   3'- guCUCCUCCU-CUCCUGCC--------UGCUGCau -5'
14067 5' -57 NC_003521.1 + 19290 0.73 0.633556
Target:  5'- gAGAGGGaGGGAGGGgGGACGACu-- -3'
miRNA:   3'- gUCUCCUcCUCUCCUgCCUGCUGcau -5'
14067 5' -57 NC_003521.1 + 26070 0.73 0.594214
Target:  5'- gAGAGGAGGaAGAGGA--GACGGCGg- -3'
miRNA:   3'- gUCUCCUCC-UCUCCUgcCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 28073 0.76 0.46202
Target:  5'- aGGAGGGGG-GAGGACG-ACGGCGg- -3'
miRNA:   3'- gUCUCCUCCuCUCCUGCcUGCUGCau -5'
14067 5' -57 NC_003521.1 + 33606 0.76 0.470997
Target:  5'- gCAcGGGAGGAGAGGAacCGGAgGACGa- -3'
miRNA:   3'- -GUcUCCUCCUCUCCU--GCCUgCUGCau -5'
14067 5' -57 NC_003521.1 + 35962 0.67 0.917533
Target:  5'- aAGcGGAGGAuGGGcGACgaGGACGACGa- -3'
miRNA:   3'- gUCuCCUCCU-CUC-CUG--CCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 36159 0.73 0.613859
Target:  5'- -cGAGGAGGAGGacacccCGGACGGCGUGc -3'
miRNA:   3'- guCUCCUCCUCUccu---GCCUGCUGCAU- -5'
14067 5' -57 NC_003521.1 + 37195 0.68 0.851785
Target:  5'- gGGAGGAGGAGccGGgGGACcGCGg- -3'
miRNA:   3'- gUCUCCUCCUCucCUgCCUGcUGCau -5'
14067 5' -57 NC_003521.1 + 38546 0.66 0.942322
Target:  5'- aCAGAGGuGGGGAcacGGcacagguagcaGCGGACGAguUGUGg -3'
miRNA:   3'- -GUCUCCuCCUCU---CC-----------UGCCUGCU--GCAU- -5'
14067 5' -57 NC_003521.1 + 40959 0.67 0.906071
Target:  5'- --aAGGAGGAGAaaGGACGGGCcccgggggGACGc- -3'
miRNA:   3'- gucUCCUCCUCU--CCUGCCUG--------CUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.