Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14068 | 5' | -56 | NC_003521.1 | + | 77706 | 0.71 | 0.759483 |
Target: 5'- uGCCCGAGgaggcggCgGUgGUCGUGgCGCUGg -3' miRNA: 3'- gCGGGCUUa------GgCAgCAGUAC-GCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 47303 | 0.76 | 0.507621 |
Target: 5'- cCGUCCG-AUCCGUCGUCucaGCcGCUGUg -3' miRNA: 3'- -GCGGGCuUAGGCAGCAGua-CG-CGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 142465 | 1.07 | 0.007128 |
Target: 5'- uCGCCCGAAUCCGUCGUCAUGCGCUGUc -3' miRNA: 3'- -GCGGGCUUAGGCAGCAGUACGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 89457 | 0.67 | 0.928919 |
Target: 5'- uGCUCGuuguugUCGUCGUCAcGCGUUGa -3' miRNA: 3'- gCGGGCuua---GGCAGCAGUaCGCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 164891 | 0.68 | 0.906935 |
Target: 5'- gGCCgaGGAUCCGaCGUaCGUGCGCg-- -3' miRNA: 3'- gCGGg-CUUAGGCaGCA-GUACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 53486 | 0.68 | 0.900887 |
Target: 5'- aGCCCGAaaaGUCC-UCGcgagCcgGUGCGCUGUu -3' miRNA: 3'- gCGGGCU---UAGGcAGCa---G--UACGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 24206 | 0.66 | 0.965521 |
Target: 5'- gCGCCCGccuaCCGUCGaC-UGCuGCUGUc -3' miRNA: 3'- -GCGGGCuua-GGCAGCaGuACG-CGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 26744 | 0.66 | 0.958876 |
Target: 5'- aCGCCCGuga-UGUgGUCGgcGCGCUGg -3' miRNA: 3'- -GCGGGCuuagGCAgCAGUa-CGCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 44147 | 0.67 | 0.933858 |
Target: 5'- -cUCCGAcgCCGUCGUCGaGCagcaGCUGg -3' miRNA: 3'- gcGGGCUuaGGCAGCAGUaCG----CGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 208170 | 0.67 | 0.933858 |
Target: 5'- uGCUCGAcuuuccgCCGUCGUC-UGCGCc-- -3' miRNA: 3'- gCGGGCUua-----GGCAGCAGuACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 205734 | 0.68 | 0.906935 |
Target: 5'- cCGCCuCGAAUCCGgcaUGUCGaGCGCc-- -3' miRNA: 3'- -GCGG-GCUUAGGCa--GCAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 205035 | 0.71 | 0.777683 |
Target: 5'- aCGCCCGAuggAUCCGuuUCGUCcgucUGCGCa-- -3' miRNA: 3'- -GCGGGCU---UAGGC--AGCAGu---ACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 92208 | 0.67 | 0.947345 |
Target: 5'- cCGCCCGg--CCGcgCGaCGaGCGCUGUg -3' miRNA: 3'- -GCGGGCuuaGGCa-GCaGUaCGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 201636 | 0.69 | 0.881453 |
Target: 5'- -cCCCGA--CCGUCGUCGUcGCGCg-- -3' miRNA: 3'- gcGGGCUuaGGCAGCAGUA-CGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 5879 | 0.67 | 0.933858 |
Target: 5'- gGCUgGAG-CCGUCGUCGUccuCGCUGc -3' miRNA: 3'- gCGGgCUUaGGCAGCAGUAc--GCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 117546 | 0.66 | 0.951402 |
Target: 5'- gGaCCUGAcgCUGUCGUCGcucaCGCUGUa -3' miRNA: 3'- gC-GGGCUuaGGCAGCAGUac--GCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 5227 | 0.68 | 0.894622 |
Target: 5'- cCGCCCGAGUCCGccucUCGUCcuccCGCa-- -3' miRNA: 3'- -GCGGGCUUAGGC----AGCAGuac-GCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 22649 | 0.73 | 0.683141 |
Target: 5'- aCGCCUGggU-CGUCGUCAccuacuaccUGCuGCUGUa -3' miRNA: 3'- -GCGGGCuuAgGCAGCAGU---------ACG-CGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 197002 | 0.66 | 0.965521 |
Target: 5'- uCGCCaguGAAgCCGUCGUCA-GUGCa-- -3' miRNA: 3'- -GCGGg--CUUaGGCAGCAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 42447 | 0.66 | 0.965521 |
Target: 5'- cCGCCCGccacaaCGcCGUCcgGCGCUa- -3' miRNA: 3'- -GCGGGCuuag--GCaGCAGuaCGCGAca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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