miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 3' -45.2 NC_003521.1 + 105358 0.66 1
Target:  5'- cACUGCguCCGCGUCGAcgGggGGc-- -3'
miRNA:   3'- -UGAUGguGGCGCAGUUuaUuaUCauu -5'
14070 3' -45.2 NC_003521.1 + 120295 0.66 1
Target:  5'- --aGCCACCGCGcUCGGGg---GGUGu -3'
miRNA:   3'- ugaUGGUGGCGC-AGUUUauuaUCAUu -5'
14070 3' -45.2 NC_003521.1 + 171627 0.66 1
Target:  5'- -gUGCCGCCGaCGUCGGGUAu--GUc- -3'
miRNA:   3'- ugAUGGUGGC-GCAGUUUAUuauCAuu -5'
14070 3' -45.2 NC_003521.1 + 113607 0.66 1
Target:  5'- --gACCACCGCGccagCGAcgAcgAGUGGa -3'
miRNA:   3'- ugaUGGUGGCGCa---GUUuaUuaUCAUU- -5'
14070 3' -45.2 NC_003521.1 + 53032 0.66 0.999999
Target:  5'- --cGCCGCCGCuGUCGAA--GUGGg-- -3'
miRNA:   3'- ugaUGGUGGCG-CAGUUUauUAUCauu -5'
14070 3' -45.2 NC_003521.1 + 53506 0.66 0.999999
Target:  5'- cGCUGCUGCgGCGUCGcagcggccGAUGGUGc -3'
miRNA:   3'- -UGAUGGUGgCGCAGUuua-----UUAUCAUu -5'
14070 3' -45.2 NC_003521.1 + 126585 0.66 0.999999
Target:  5'- --aGCCGCCGuCGUgCcGGUGGUAGUGc -3'
miRNA:   3'- ugaUGGUGGC-GCA-GuUUAUUAUCAUu -5'
14070 3' -45.2 NC_003521.1 + 117268 0.66 0.999999
Target:  5'- cGCcACCGCCGuCGUCGGcc-GUGGUGc -3'
miRNA:   3'- -UGaUGGUGGC-GCAGUUuauUAUCAUu -5'
14070 3' -45.2 NC_003521.1 + 36248 0.66 0.999999
Target:  5'- gACUGCCGgCGCG-CGAcGUGGUGGa-- -3'
miRNA:   3'- -UGAUGGUgGCGCaGUU-UAUUAUCauu -5'
14070 3' -45.2 NC_003521.1 + 54144 0.66 0.999999
Target:  5'- uGCUACCGCCgGCGUUGGAg---AGg-- -3'
miRNA:   3'- -UGAUGGUGG-CGCAGUUUauuaUCauu -5'
14070 3' -45.2 NC_003521.1 + 184917 0.67 0.999999
Target:  5'- gUUGCCGCCGCcGUCGGAg---GGUc- -3'
miRNA:   3'- uGAUGGUGGCG-CAGUUUauuaUCAuu -5'
14070 3' -45.2 NC_003521.1 + 76914 0.67 0.999999
Target:  5'- cGCUGCCGCCGCaccCGAGUAAc----- -3'
miRNA:   3'- -UGAUGGUGGCGca-GUUUAUUaucauu -5'
14070 3' -45.2 NC_003521.1 + 118214 0.66 0.999999
Target:  5'- cGCgcgGCCGCCGCcGUCGccggGGUGGUc- -3'
miRNA:   3'- -UGa--UGGUGGCG-CAGUuua-UUAUCAuu -5'
14070 3' -45.2 NC_003521.1 + 103746 0.66 0.999999
Target:  5'- aGC-ACCGCCGCGU--GGUGGaAGUAGa -3'
miRNA:   3'- -UGaUGGUGGCGCAguUUAUUaUCAUU- -5'
14070 3' -45.2 NC_003521.1 + 100653 0.67 0.999997
Target:  5'- ---cCCGCCGCGUUGcgucggcugcggauGGUGAUAGUGGu -3'
miRNA:   3'- ugauGGUGGCGCAGU--------------UUAUUAUCAUU- -5'
14070 3' -45.2 NC_003521.1 + 90211 0.67 0.999997
Target:  5'- aGCaGCCGCCGCaaCAGcccacggggacGUGAUAGUGAg -3'
miRNA:   3'- -UGaUGGUGGCGcaGUU-----------UAUUAUCAUU- -5'
14070 3' -45.2 NC_003521.1 + 52601 0.67 0.999997
Target:  5'- uGCUGCgACCGCuUCGAcgAGUGGc-- -3'
miRNA:   3'- -UGAUGgUGGCGcAGUUuaUUAUCauu -5'
14070 3' -45.2 NC_003521.1 + 146416 0.67 0.999996
Target:  5'- --gGCCGCCGCGUCAAc--------- -3'
miRNA:   3'- ugaUGGUGGCGCAGUUuauuaucauu -5'
14070 3' -45.2 NC_003521.1 + 215043 0.67 0.999995
Target:  5'- gGCUGCaGCCGCGUgGAGccccugggcugccUGGUGGUGc -3'
miRNA:   3'- -UGAUGgUGGCGCAgUUU-------------AUUAUCAUu -5'
14070 3' -45.2 NC_003521.1 + 119509 0.67 0.999994
Target:  5'- --cGCCauGCCGgGUCAGGUGcgGGUAc -3'
miRNA:   3'- ugaUGG--UGGCgCAGUUUAUuaUCAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.