Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14071 | 3' | -53 | NC_003521.1 | + | 141906 | 1.07 | 0.010792 |
Target: 5'- cGCGAUCCGACACAACUCGCCCAUGUUc -3' miRNA: 3'- -CGCUAGGCUGUGUUGAGCGGGUACAA- -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 48030 | 0.76 | 0.636537 |
Target: 5'- aGCGAUCCGACAagGGCaaGCCCGUGc- -3' miRNA: 3'- -CGCUAGGCUGUg-UUGagCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 101910 | 0.76 | 0.667005 |
Target: 5'- cGUGGUCCGACACcgagccggcguACUCGCCgGUGg- -3' miRNA: 3'- -CGCUAGGCUGUGu----------UGAGCGGgUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 177247 | 0.74 | 0.774764 |
Target: 5'- cGCGAUa-GACGCGACaggccguaUCGCCCGUGUc -3' miRNA: 3'- -CGCUAggCUGUGUUG--------AGCGGGUACAa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 189255 | 0.72 | 0.859911 |
Target: 5'- aGCGAcUCCGACACucguCUCGCCUccGa- -3' miRNA: 3'- -CGCU-AGGCUGUGuu--GAGCGGGuaCaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 71479 | 0.71 | 0.881815 |
Target: 5'- gGCGcgCCGACGCGACUgGUCCu---- -3' miRNA: 3'- -CGCuaGGCUGUGUUGAgCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 210827 | 0.71 | 0.881815 |
Target: 5'- aGCGGUCCGugGCG-CUCGUCCc---- -3' miRNA: 3'- -CGCUAGGCugUGUuGAGCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 115533 | 0.71 | 0.888685 |
Target: 5'- cGCGAa-CGACGCGGCUCGCCUg---- -3' miRNA: 3'- -CGCUagGCUGUGUUGAGCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 152148 | 0.71 | 0.89533 |
Target: 5'- aGCaGUUCGGCGCGguACUCGCUCAUGc- -3' miRNA: 3'- -CGcUAGGCUGUGU--UGAGCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 100545 | 0.71 | 0.907939 |
Target: 5'- gGgGAUCCGACgACGauACUCGCCCu---- -3' miRNA: 3'- -CgCUAGGCUG-UGU--UGAGCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 213147 | 0.7 | 0.919617 |
Target: 5'- cGUGAucUCCG-CGC-GCUCGCUCGUGUg -3' miRNA: 3'- -CGCU--AGGCuGUGuUGAGCGGGUACAa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 127966 | 0.7 | 0.930353 |
Target: 5'- cGCGGgagcagCUGGgGCAGCUCGgCCAUGa- -3' miRNA: 3'- -CGCUa-----GGCUgUGUUGAGCgGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 32403 | 0.7 | 0.930353 |
Target: 5'- gGCG-UgCGACACAGCa-GCCCGUGg- -3' miRNA: 3'- -CGCuAgGCUGUGUUGagCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 137134 | 0.69 | 0.944689 |
Target: 5'- cGCGuUCgGACGCucgGACUCGCCCGc--- -3' miRNA: 3'- -CGCuAGgCUGUG---UUGAGCGGGUacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 41628 | 0.69 | 0.944689 |
Target: 5'- cGUGGUCUGGgGCGuggCGCCCGUGg- -3' miRNA: 3'- -CGCUAGGCUgUGUugaGCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 78022 | 0.69 | 0.956942 |
Target: 5'- cGCuGAcCCaGAUACAGCUCGgCCAUGg- -3' miRNA: 3'- -CG-CUaGG-CUGUGUUGAGCgGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 128047 | 0.69 | 0.960577 |
Target: 5'- cGCGGUagaaguggCCGACGCGccgcgcgauGC-CGCCCAUGg- -3' miRNA: 3'- -CGCUA--------GGCUGUGU---------UGaGCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 120977 | 0.68 | 0.963994 |
Target: 5'- uGCGGUCCG-C-CAGCUCGUCCu---- -3' miRNA: 3'- -CGCUAGGCuGuGUUGAGCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 125036 | 0.68 | 0.970196 |
Target: 5'- cGCGGguaUCCG-CGCGugUgGUCCGUGUa -3' miRNA: 3'- -CGCU---AGGCuGUGUugAgCGGGUACAa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 111160 | 0.68 | 0.972992 |
Target: 5'- aCGGUCCGcauaGCGCGGC-CGCCCcgGc- -3' miRNA: 3'- cGCUAGGC----UGUGUUGaGCGGGuaCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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