miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 3' -53 NC_003521.1 + 17360 0.67 0.985927
Target:  5'- cGUGAcgCCGGCGCGGCg-GCCCAg--- -3'
miRNA:   3'- -CGCUa-GGCUGUGUUGagCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 32403 0.7 0.930353
Target:  5'- gGCG-UgCGACACAGCa-GCCCGUGg- -3'
miRNA:   3'- -CGCuAgGCUGUGUUGagCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 41628 0.69 0.944689
Target:  5'- cGUGGUCUGGgGCGuggCGCCCGUGg- -3'
miRNA:   3'- -CGCUAGGCUgUGUugaGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 48030 0.76 0.636537
Target:  5'- aGCGAUCCGACAagGGCaaGCCCGUGc- -3'
miRNA:   3'- -CGCUAGGCUGUg-UUGagCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 53199 0.66 0.992522
Target:  5'- aGCGGcgCgCGGCcCGGCUCGCCC-UGg- -3'
miRNA:   3'- -CGCUa-G-GCUGuGUUGAGCGGGuACaa -5'
14071 3' -53 NC_003521.1 + 67173 0.66 0.991453
Target:  5'- -gGGUCCcGCGCAGC-CGCCCGa--- -3'
miRNA:   3'- cgCUAGGcUGUGUUGaGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 71479 0.71 0.881815
Target:  5'- gGCGcgCCGACGCGACUgGUCCu---- -3'
miRNA:   3'- -CGCuaGGCUGUGUUGAgCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 71872 0.66 0.988957
Target:  5'- cGUGAUCCG-UGCGGCUCuCCCA-GUa -3'
miRNA:   3'- -CGCUAGGCuGUGUUGAGcGGGUaCAa -5'
14071 3' -53 NC_003521.1 + 74603 0.66 0.987513
Target:  5'- cGCGG-CCGGCGCGcCUCGCCg----- -3'
miRNA:   3'- -CGCUaGGCUGUGUuGAGCGGguacaa -5'
14071 3' -53 NC_003521.1 + 78022 0.69 0.956942
Target:  5'- cGCuGAcCCaGAUACAGCUCGgCCAUGg- -3'
miRNA:   3'- -CG-CUaGG-CUGUGUUGAGCgGGUACaa -5'
14071 3' -53 NC_003521.1 + 78608 0.67 0.982298
Target:  5'- aGCGGagaggcaCCGACugcGCGGCUCGCCCcagGUa -3'
miRNA:   3'- -CGCUa------GGCUG---UGUUGAGCGGGua-CAa -5'
14071 3' -53 NC_003521.1 + 92398 0.66 0.993481
Target:  5'- -gGAgccgCCGGCGCGGC-CGCCCGc--- -3'
miRNA:   3'- cgCUa---GGCUGUGUUGaGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 100545 0.71 0.907939
Target:  5'- gGgGAUCCGACgACGauACUCGCCCu---- -3'
miRNA:   3'- -CgCUAGGCUG-UGU--UGAGCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 101910 0.76 0.667005
Target:  5'- cGUGGUCCGACACcgagccggcguACUCGCCgGUGg- -3'
miRNA:   3'- -CGCUAGGCUGUGu----------UGAGCGGgUACaa -5'
14071 3' -53 NC_003521.1 + 103509 0.66 0.993481
Target:  5'- gGCGAgCCcagcagcaGGCGCGcgaACUCGCUCAUGg- -3'
miRNA:   3'- -CGCUaGG--------CUGUGU---UGAGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 110372 0.66 0.991453
Target:  5'- cGCGA-CCGAaa-AACUCGgCCGUGa- -3'
miRNA:   3'- -CGCUaGGCUgugUUGAGCgGGUACaa -5'
14071 3' -53 NC_003521.1 + 111160 0.68 0.972992
Target:  5'- aCGGUCCGcauaGCGCGGC-CGCCCcgGc- -3'
miRNA:   3'- cGCUAGGC----UGUGUUGaGCGGGuaCaa -5'
14071 3' -53 NC_003521.1 + 113868 0.66 0.993481
Target:  5'- gGCGGUgguguaagcgCCGuCACGugUCGCCCGc--- -3'
miRNA:   3'- -CGCUA----------GGCuGUGUugAGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 115533 0.71 0.888685
Target:  5'- cGCGAa-CGACGCGGCUCGCCUg---- -3'
miRNA:   3'- -CGCUagGCUGUGUUGAGCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 120820 0.66 0.993481
Target:  5'- cUGAUCaacuacagccagCGGCGCAugUCGCCCGg--- -3'
miRNA:   3'- cGCUAG------------GCUGUGUugAGCGGGUacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.