miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 3' -53 NC_003521.1 + 53199 0.66 0.992522
Target:  5'- aGCGGcgCgCGGCcCGGCUCGCCC-UGg- -3'
miRNA:   3'- -CGCUa-G-GCUGuGUUGAGCGGGuACaa -5'
14071 3' -53 NC_003521.1 + 134559 0.68 0.975593
Target:  5'- gGCGAU---GCGCAGCUCGUCCAgGUa -3'
miRNA:   3'- -CGCUAggcUGUGUUGAGCGGGUaCAa -5'
14071 3' -53 NC_003521.1 + 226420 0.67 0.977773
Target:  5'- gGCGAUCuccgagcgCGACACGccguagcgcgccaGCUCGUCCAgGUUg -3'
miRNA:   3'- -CGCUAG--------GCUGUGU-------------UGAGCGGGUaCAA- -5'
14071 3' -53 NC_003521.1 + 126164 0.67 0.978006
Target:  5'- -aGGUCCuGCACGcGCaCGCCCAUGUc -3'
miRNA:   3'- cgCUAGGcUGUGU-UGaGCGGGUACAa -5'
14071 3' -53 NC_003521.1 + 74603 0.66 0.987513
Target:  5'- cGCGG-CCGGCGCGcCUCGCCg----- -3'
miRNA:   3'- -CGCUaGGCUGUGUuGAGCGGguacaa -5'
14071 3' -53 NC_003521.1 + 192778 0.66 0.988957
Target:  5'- uCGAUcuccaCCGGCACgGGCUUGCCCuUGUc -3'
miRNA:   3'- cGCUA-----GGCUGUG-UUGAGCGGGuACAa -5'
14071 3' -53 NC_003521.1 + 71872 0.66 0.988957
Target:  5'- cGUGAUCCG-UGCGGCUCuCCCA-GUa -3'
miRNA:   3'- -CGCUAGGCuGUGUUGAGcGGGUaCAa -5'
14071 3' -53 NC_003521.1 + 67173 0.66 0.991453
Target:  5'- -gGGUCCcGCGCAGC-CGCCCGa--- -3'
miRNA:   3'- cgCUAGGcUGUGUUGaGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 127282 0.66 0.991453
Target:  5'- cGCGGcacgUCCGACACGccguggugGCgCGCCUcgAUGUUg -3'
miRNA:   3'- -CGCU----AGGCUGUGU--------UGaGCGGG--UACAA- -5'
14071 3' -53 NC_003521.1 + 111160 0.68 0.972992
Target:  5'- aCGGUCCGcauaGCGCGGC-CGCCCcgGc- -3'
miRNA:   3'- cGCUAGGC----UGUGUUGaGCGGGuaCaa -5'
14071 3' -53 NC_003521.1 + 125036 0.68 0.970196
Target:  5'- cGCGGguaUCCG-CGCGugUgGUCCGUGUa -3'
miRNA:   3'- -CGCU---AGGCuGUGUugAgCGGGUACAa -5'
14071 3' -53 NC_003521.1 + 120977 0.68 0.963994
Target:  5'- uGCGGUCCG-C-CAGCUCGUCCu---- -3'
miRNA:   3'- -CGCUAGGCuGuGUUGAGCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 210827 0.71 0.881815
Target:  5'- aGCGGUCCGugGCG-CUCGUCCc---- -3'
miRNA:   3'- -CGCUAGGCugUGUuGAGCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 152148 0.71 0.89533
Target:  5'- aGCaGUUCGGCGCGguACUCGCUCAUGc- -3'
miRNA:   3'- -CGcUAGGCUGUGU--UGAGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 100545 0.71 0.907939
Target:  5'- gGgGAUCCGACgACGauACUCGCCCu---- -3'
miRNA:   3'- -CgCUAGGCUG-UGU--UGAGCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 32403 0.7 0.930353
Target:  5'- gGCG-UgCGACACAGCa-GCCCGUGg- -3'
miRNA:   3'- -CGCuAgGCUGUGUUGagCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 41628 0.69 0.944689
Target:  5'- cGUGGUCUGGgGCGuggCGCCCGUGg- -3'
miRNA:   3'- -CGCUAGGCUgUGUugaGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 137134 0.69 0.944689
Target:  5'- cGCGuUCgGACGCucgGACUCGCCCGc--- -3'
miRNA:   3'- -CGCuAGgCUGUG---UUGAGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 78022 0.69 0.956942
Target:  5'- cGCuGAcCCaGAUACAGCUCGgCCAUGg- -3'
miRNA:   3'- -CG-CUaGG-CUGUGUUGAGCgGGUACaa -5'
14071 3' -53 NC_003521.1 + 128047 0.69 0.960577
Target:  5'- cGCGGUagaaguggCCGACGCGccgcgcgauGC-CGCCCAUGg- -3'
miRNA:   3'- -CGCUA--------GGCUGUGU---------UGaGCGGGUACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.