Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14071 | 3' | -53 | NC_003521.1 | + | 141906 | 1.07 | 0.010792 |
Target: 5'- cGCGAUCCGACACAACUCGCCCAUGUUc -3' miRNA: 3'- -CGCUAGGCUGUGUUGAGCGGGUACAA- -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 221631 | 0.67 | 0.978006 |
Target: 5'- aGCGAUCCGuCuucuGCAGCUCGUgCAcGUc -3' miRNA: 3'- -CGCUAGGCuG----UGUUGAGCGgGUaCAa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 122109 | 0.68 | 0.972992 |
Target: 5'- cCGGUgCCG-CGCccCUCGCCCAUGa- -3' miRNA: 3'- cGCUA-GGCuGUGuuGAGCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 127966 | 0.7 | 0.930353 |
Target: 5'- cGCGGgagcagCUGGgGCAGCUCGgCCAUGa- -3' miRNA: 3'- -CGCUa-----GGCUgUGUUGAGCgGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 115533 | 0.71 | 0.888685 |
Target: 5'- cGCGAa-CGACGCGGCUCGCCUg---- -3' miRNA: 3'- -CGCUagGCUGUGUUGAGCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 71479 | 0.71 | 0.881815 |
Target: 5'- gGCGcgCCGACGCGACUgGUCCu---- -3' miRNA: 3'- -CGCuaGGCUGUGUUGAgCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 92398 | 0.66 | 0.993481 |
Target: 5'- -gGAgccgCCGGCGCGGC-CGCCCGc--- -3' miRNA: 3'- cgCUa---GGCUGUGUUGaGCGGGUacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 110372 | 0.66 | 0.991453 |
Target: 5'- cGCGA-CCGAaa-AACUCGgCCGUGa- -3' miRNA: 3'- -CGCUaGGCUgugUUGAGCgGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 131323 | 0.67 | 0.983075 |
Target: 5'- aGCGG-CCGGCGCGaccACUCGCUggagcgccuggcgcgCAUGUUc -3' miRNA: 3'- -CGCUaGGCUGUGU---UGAGCGG---------------GUACAA- -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 155063 | 0.67 | 0.978006 |
Target: 5'- uGCGAggcgCUGGC-CAcCUCGCUCAUGg- -3' miRNA: 3'- -CGCUa---GGCUGuGUuGAGCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 213147 | 0.7 | 0.919617 |
Target: 5'- cGUGAucUCCG-CGC-GCUCGCUCGUGUg -3' miRNA: 3'- -CGCU--AGGCuGUGuUGAGCGGGUACAa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 48030 | 0.76 | 0.636537 |
Target: 5'- aGCGAUCCGACAagGGCaaGCCCGUGc- -3' miRNA: 3'- -CGCUAGGCUGUg-UUGagCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 17360 | 0.67 | 0.985927 |
Target: 5'- cGUGAcgCCGGCGCGGCg-GCCCAg--- -3' miRNA: 3'- -CGCUa-GGCUGUGUUGagCGGGUacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 101910 | 0.76 | 0.667005 |
Target: 5'- cGUGGUCCGACACcgagccggcguACUCGCCgGUGg- -3' miRNA: 3'- -CGCUAGGCUGUGu----------UGAGCGGgUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 151882 | 0.67 | 0.978006 |
Target: 5'- gGCGGcgcucucgcUCUGugAUcgcuGCUCGCCCGUGg- -3' miRNA: 3'- -CGCU---------AGGCugUGu---UGAGCGGGUACaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 184774 | 0.66 | 0.991453 |
Target: 5'- cGUGAUCUGGgGCAACgcgCGCCUg---- -3' miRNA: 3'- -CGCUAGGCUgUGUUGa--GCGGGuacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 120820 | 0.66 | 0.993481 |
Target: 5'- cUGAUCaacuacagccagCGGCGCAugUCGCCCGg--- -3' miRNA: 3'- cGCUAG------------GCUGUGUugAGCGGGUacaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 189255 | 0.72 | 0.859911 |
Target: 5'- aGCGAcUCCGACACucguCUCGCCUccGa- -3' miRNA: 3'- -CGCU-AGGCUGUGuu--GAGCGGGuaCaa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 78608 | 0.67 | 0.982298 |
Target: 5'- aGCGGagaggcaCCGACugcGCGGCUCGCCCcagGUa -3' miRNA: 3'- -CGCUa------GGCUG---UGUUGAGCGGGua-CAa -5' |
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14071 | 3' | -53 | NC_003521.1 | + | 126164 | 0.67 | 0.978006 |
Target: 5'- -aGGUCCuGCACGcGCaCGCCCAUGUc -3' miRNA: 3'- cgCUAGGcUGUGU-UGaGCGGGUACAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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