miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 3' -55.3 NC_003521.1 + 163004 0.66 0.971794
Target:  5'- cGC-GUCaUCUUCGACGGGCAGcagaucCGCa -3'
miRNA:   3'- aUGaCAG-GGAAGCUGCUCGUCu-----GCGa -5'
14073 3' -55.3 NC_003521.1 + 102765 0.66 0.971794
Target:  5'- aGCUGUCCg--CGGCGGucGCGGGCGa- -3'
miRNA:   3'- aUGACAGGgaaGCUGCU--CGUCUGCga -5'
14073 3' -55.3 NC_003521.1 + 13590 0.66 0.968945
Target:  5'- gAUUGgcccCCCUggCGACGAGUggaaugggGGGCGCg -3'
miRNA:   3'- aUGACa---GGGAa-GCUGCUCG--------UCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 136868 0.66 0.968352
Target:  5'- cGCUGUCCCgacaagcgcaucUCgGGCucGCAGAUGCUc -3'
miRNA:   3'- aUGACAGGGa-----------AG-CUGcuCGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 86849 0.66 0.962644
Target:  5'- aGCUG-CUCUaCGGCGuguGCaAGACGCUg -3'
miRNA:   3'- aUGACaGGGAaGCUGCu--CG-UCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 117224 0.66 0.959181
Target:  5'- gGCUGcCCCUgCGACGcaagGGCAcgcaucacgcGGCGCUg -3'
miRNA:   3'- aUGACaGGGAaGCUGC----UCGU----------CUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 191608 0.66 0.959181
Target:  5'- aUGCccGUCCCUUCGugGAccGCGacuCGCUg -3'
miRNA:   3'- -AUGa-CAGGGAAGCugCU--CGUcu-GCGA- -5'
14073 3' -55.3 NC_003521.1 + 124285 0.66 0.959181
Target:  5'- gGCUGacgaucUCCagaaagcgCGGCGAGguGACGCa -3'
miRNA:   3'- aUGAC------AGGgaa-----GCUGCUCguCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 172564 0.66 0.959181
Target:  5'- cGCUGUCCCggggUCGGCGGucGCAc-CGCc -3'
miRNA:   3'- aUGACAGGGa---AGCUGCU--CGUcuGCGa -5'
14073 3' -55.3 NC_003521.1 + 53534 0.66 0.955504
Target:  5'- gUGCUGUCCgCUcCGGguCGAGguGcCGCUg -3'
miRNA:   3'- -AUGACAGG-GAaGCU--GCUCguCuGCGA- -5'
14073 3' -55.3 NC_003521.1 + 209259 0.66 0.955504
Target:  5'- aGCgUGUCCCgcgaccugggcUUCGcCGAguggucGCAGACGCUg -3'
miRNA:   3'- aUG-ACAGGG-----------AAGCuGCU------CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 61867 0.66 0.955124
Target:  5'- -cCUGUCCaugCGaccaccacggauaGCGAGCAGAUGCc -3'
miRNA:   3'- auGACAGGgaaGC-------------UGCUCGUCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 210177 0.67 0.951608
Target:  5'- gGCg--CCa--UGACGAGCAGGCGCg -3'
miRNA:   3'- aUGacaGGgaaGCUGCUCGUCUGCGa -5'
14073 3' -55.3 NC_003521.1 + 49781 0.67 0.951608
Target:  5'- aACUGagCg-UCGGCcAGCAGACGCUg -3'
miRNA:   3'- aUGACagGgaAGCUGcUCGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 102511 0.67 0.944911
Target:  5'- cGCagGUCCaugUCggccacgaaguugaaGACGGGCAGGCGCUc -3'
miRNA:   3'- aUGa-CAGGga-AG---------------CUGCUCGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 74807 0.67 0.943147
Target:  5'- aUGCUGaaCCC--CGACGAGCAGGCucGCg -3'
miRNA:   3'- -AUGACa-GGGaaGCUGCUCGUCUG--CGa -5'
14073 3' -55.3 NC_003521.1 + 165432 0.67 0.943147
Target:  5'- uUGCUGgugUUCUUgGGCGAGgGGugGCa -3'
miRNA:   3'- -AUGACa--GGGAAgCUGCUCgUCugCGa -5'
14073 3' -55.3 NC_003521.1 + 201608 0.67 0.938577
Target:  5'- cGCUGUCCCcgagccCG-CGcugcuGCGGACGCUg -3'
miRNA:   3'- aUGACAGGGaa----GCuGCu----CGUCUGCGA- -5'
14073 3' -55.3 NC_003521.1 + 123895 0.67 0.938577
Target:  5'- aGCUGUCgCgugcugUCGGCGcGCGG-CGCUg -3'
miRNA:   3'- aUGACAGgGa-----AGCUGCuCGUCuGCGA- -5'
14073 3' -55.3 NC_003521.1 + 1381 0.67 0.938577
Target:  5'- cGCUGUCCCcgagccCG-CGcugcuGCGGACGCUg -3'
miRNA:   3'- aUGACAGGGaa----GCuGCu----CGUCUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.