Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14073 | 3' | -55.3 | NC_003521.1 | + | 210177 | 0.67 | 0.951608 |
Target: 5'- gGCg--CCa--UGACGAGCAGGCGCg -3' miRNA: 3'- aUGacaGGgaaGCUGCUCGUCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 209259 | 0.66 | 0.955504 |
Target: 5'- aGCgUGUCCCgcgaccugggcUUCGcCGAguggucGCAGACGCUg -3' miRNA: 3'- aUG-ACAGGG-----------AAGCuGCU------CGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 201608 | 0.67 | 0.938577 |
Target: 5'- cGCUGUCCCcgagccCG-CGcugcuGCGGACGCUg -3' miRNA: 3'- aUGACAGGGaa----GCuGCu----CGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 197927 | 0.67 | 0.933777 |
Target: 5'- cGCUGggcUCCagaUCGACGGGCGcGCGCUu -3' miRNA: 3'- aUGAC---AGGga-AGCUGCUCGUcUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 196762 | 0.68 | 0.906322 |
Target: 5'- cUGCUGcCCCggcCGGCGcgaccGCGGGCGCg -3' miRNA: 3'- -AUGACaGGGaa-GCUGCu----CGUCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 191608 | 0.66 | 0.959181 |
Target: 5'- aUGCccGUCCCUUCGugGAccGCGacuCGCUg -3' miRNA: 3'- -AUGa-CAGGGAAGCugCU--CGUcu-GCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 185160 | 0.71 | 0.80109 |
Target: 5'- cGgUGgggCCCgaCGACGAGguGGCGCa -3' miRNA: 3'- aUgACa--GGGaaGCUGCUCguCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 184346 | 0.71 | 0.80109 |
Target: 5'- gUACUGcCUCUUCgGGCGGGCcguGGCGCg -3' miRNA: 3'- -AUGACaGGGAAG-CUGCUCGu--CUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 181460 | 0.71 | 0.792236 |
Target: 5'- aUGCUGUCCCagUCGGC--GCAGACGg- -3' miRNA: 3'- -AUGACAGGGa-AGCUGcuCGUCUGCga -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 172564 | 0.66 | 0.959181 |
Target: 5'- cGCUGUCCCggggUCGGCGGucGCAc-CGCc -3' miRNA: 3'- aUGACAGGGa---AGCUGCU--CGUcuGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 170765 | 0.68 | 0.917994 |
Target: 5'- gUGCUGgCCCgacaGGCGGuGCAGACGUUu -3' miRNA: 3'- -AUGACaGGGaag-CUGCU-CGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 168051 | 0.67 | 0.933777 |
Target: 5'- aGCUGUgCCgccgaCGGCGGGUgcucgAGACGCg -3' miRNA: 3'- aUGACAgGGaa---GCUGCUCG-----UCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 165432 | 0.67 | 0.943147 |
Target: 5'- uUGCUGgugUUCUUgGGCGAGgGGugGCa -3' miRNA: 3'- -AUGACa--GGGAAgCUGCUCgUCugCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 164530 | 0.67 | 0.928747 |
Target: 5'- gUGCUGUCguugcUCUUCGACGAccgcgaggucucGCAGGCGg- -3' miRNA: 3'- -AUGACAG-----GGAAGCUGCU------------CGUCUGCga -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 163004 | 0.66 | 0.971794 |
Target: 5'- cGC-GUCaUCUUCGACGGGCAGcagaucCGCa -3' miRNA: 3'- aUGaCAG-GGAAGCUGCUCGUCu-----GCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 145861 | 0.67 | 0.933777 |
Target: 5'- -uCUGggCCCggCGGCGGGCGG-CGCc -3' miRNA: 3'- auGACa-GGGaaGCUGCUCGUCuGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 141409 | 1.06 | 0.007373 |
Target: 5'- cUACUGUCCCUUCGACGAGCAGACGCUg -3' miRNA: 3'- -AUGACAGGGAAGCUGCUCGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 136868 | 0.66 | 0.968352 |
Target: 5'- cGCUGUCCCgacaagcgcaucUCgGGCucGCAGAUGCUc -3' miRNA: 3'- aUGACAGGGa-----------AG-CUGcuCGUCUGCGA- -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 124285 | 0.66 | 0.959181 |
Target: 5'- gGCUGacgaucUCCagaaagcgCGGCGAGguGACGCa -3' miRNA: 3'- aUGAC------AGGgaa-----GCUGCUCguCUGCGa -5' |
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14073 | 3' | -55.3 | NC_003521.1 | + | 123895 | 0.67 | 0.938577 |
Target: 5'- aGCUGUCgCgugcugUCGGCGcGCGG-CGCUg -3' miRNA: 3'- aUGACAGgGa-----AGCUGCuCGUCuGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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