Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 47994 | 0.66 | 0.983853 |
Target: 5'- cCACGga-CGCGCCGCcgg-GCUUCUGc -3' miRNA: 3'- -GUGCggaGCGCGGCGcaaaUGAAGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 120096 | 0.66 | 0.981955 |
Target: 5'- -cCGUgUCGUGCUGCGaUUugUUCUc -3' miRNA: 3'- guGCGgAGCGCGGCGCaAAugAAGAc -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 149961 | 0.66 | 0.981955 |
Target: 5'- gCGCGCUUCGCguuggcacuguGCCGCGcaUGCU-CUa -3' miRNA: 3'- -GUGCGGAGCG-----------CGGCGCaaAUGAaGAc -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 167161 | 0.66 | 0.981756 |
Target: 5'- gGCGCCUCgggcgucuuggagGCgGCCGCGgcggaggcCUUCUGc -3' miRNA: 3'- gUGCGGAG-------------CG-CGGCGCaaau----GAAGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 153251 | 0.66 | 0.979895 |
Target: 5'- cUugGCgUCGCuaCCGCGgucgUGCUUCUc -3' miRNA: 3'- -GugCGgAGCGc-GGCGCaa--AUGAAGAc -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 137516 | 0.66 | 0.979895 |
Target: 5'- gACGUgcaGCGCCGCGUccGCUUCc- -3' miRNA: 3'- gUGCGgagCGCGGCGCAaaUGAAGac -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 196013 | 0.66 | 0.979895 |
Target: 5'- --gGCCUCGUgcaGCUGCGUgaGCaUCUGc -3' miRNA: 3'- gugCGGAGCG---CGGCGCAaaUGaAGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 128463 | 0.66 | 0.979895 |
Target: 5'- gACGCCgcaGcCGCCGCGUgcgUACggUgUGg -3' miRNA: 3'- gUGCGGag-C-GCGGCGCAa--AUGa-AgAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 202824 | 0.66 | 0.979895 |
Target: 5'- -cCGCCUCaGCGCCGgCGacUACUcuaccgucaauUCUGa -3' miRNA: 3'- guGCGGAG-CGCGGC-GCaaAUGA-----------AGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 205869 | 0.66 | 0.979895 |
Target: 5'- uCugGCCgaccucugcgUGCGCCGCGacUACgagggUCUGc -3' miRNA: 3'- -GugCGGa---------GCGCGGCGCaaAUGa----AGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 198815 | 0.66 | 0.977664 |
Target: 5'- gGCGUCugUCGUGCCGcCGUgUUGCUgCUGc -3' miRNA: 3'- gUGCGG--AGCGCGGC-GCA-AAUGAaGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 175207 | 0.66 | 0.975256 |
Target: 5'- aGCuCCUCGCggGCCGUGUUUaGCUgCUGu -3' miRNA: 3'- gUGcGGAGCG--CGGCGCAAA-UGAaGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 149379 | 0.67 | 0.969882 |
Target: 5'- uGCGCCUCGUcacccCCGUGg--GCUUCg- -3' miRNA: 3'- gUGCGGAGCGc----GGCGCaaaUGAAGac -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 48760 | 0.67 | 0.966903 |
Target: 5'- gACGCCUCacaaacCGCCGCGg--ACgccgcgUCUGc -3' miRNA: 3'- gUGCGGAGc-----GCGGCGCaaaUGa-----AGAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 111851 | 0.67 | 0.963721 |
Target: 5'- uGCGCaaaGCGCCGCcg-UACUUCg- -3' miRNA: 3'- gUGCGgagCGCGGCGcaaAUGAAGac -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 17605 | 0.67 | 0.963721 |
Target: 5'- aCGCGCCagGCGUCGCGgcguaUACgaacccgCUGg -3' miRNA: 3'- -GUGCGGagCGCGGCGCaa---AUGaa-----GAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 154236 | 0.67 | 0.963721 |
Target: 5'- aGCGCUUCGcCGCCGaGg--ACUUCUc -3' miRNA: 3'- gUGCGGAGC-GCGGCgCaaaUGAAGAc -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 166644 | 0.67 | 0.963721 |
Target: 5'- gCGCGCCggGCGCCGCGgc-GCa---- -3' miRNA: 3'- -GUGCGGagCGCGGCGCaaaUGaagac -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 118017 | 0.67 | 0.956731 |
Target: 5'- gGCGUgUCGCuGCCGCGgg-ACUcggugCUGg -3' miRNA: 3'- gUGCGgAGCG-CGGCGCaaaUGAa----GAC- -5' |
|||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 223677 | 0.67 | 0.956731 |
Target: 5'- --gGCCUCGCGCCGC---UGCUg--- -3' miRNA: 3'- gugCGGAGCGCGGCGcaaAUGAagac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home