Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 441 | 0.69 | 0.902289 |
Target: 5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3' miRNA: 3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 1617 | 0.69 | 0.914244 |
Target: 5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3' miRNA: 3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 7623 | 0.68 | 0.940123 |
Target: 5'- cUAUGCUaCGCGCUGCGc---CUUCUGg -3' miRNA: 3'- -GUGCGGaGCGCGGCGCaaauGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 11554 | 0.68 | 0.930461 |
Target: 5'- cUACGCCUCcgGCGCCGuCGUgcgccggACU-CUGc -3' miRNA: 3'- -GUGCGGAG--CGCGGC-GCAaa-----UGAaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 17605 | 0.67 | 0.963721 |
Target: 5'- aCGCGCCagGCGUCGCGgcguaUACgaacccgCUGg -3' miRNA: 3'- -GUGCGGagCGCGGCGCaa---AUGaa-----GAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 32881 | 0.69 | 0.914244 |
Target: 5'- gGCGCC-CGCGCCGCcggUGCUg--- -3' miRNA: 3'- gUGCGGaGCGCGGCGcaaAUGAagac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 46551 | 0.69 | 0.914244 |
Target: 5'- aGgGCCUCGCGCCGgGUg-----CUGa -3' miRNA: 3'- gUgCGGAGCGCGGCgCAaaugaaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 47994 | 0.66 | 0.983853 |
Target: 5'- cCACGga-CGCGCCGCcgg-GCUUCUGc -3' miRNA: 3'- -GUGCggaGCGCGGCGcaaaUGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 48760 | 0.67 | 0.966903 |
Target: 5'- gACGCCUCacaaacCGCCGCGg--ACgccgcgUCUGc -3' miRNA: 3'- gUGCGGAGc-----GCGGCGCaaaUGa-----AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 74611 | 0.7 | 0.882681 |
Target: 5'- gCGCGCCUCGcCGCCGCGccaACa---- -3' miRNA: 3'- -GUGCGGAGC-GCGGCGCaaaUGaagac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 85937 | 0.7 | 0.868533 |
Target: 5'- gCACGuUCUCGCGCCGCGagcGCUUa-- -3' miRNA: 3'- -GUGC-GGAGCGCGGCGCaaaUGAAgac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 87968 | 0.75 | 0.650378 |
Target: 5'- cUACGCCUCGCGgCGCGaggACUcggugaaUCUGg -3' miRNA: 3'- -GUGCGGAGCGCgGCGCaaaUGA-------AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 105401 | 0.68 | 0.944611 |
Target: 5'- gGCGCCaaaUCGCGCCGgGUgaUUGgUUCc- -3' miRNA: 3'- gUGCGG---AGCGCGGCgCA--AAUgAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 111851 | 0.67 | 0.963721 |
Target: 5'- uGCGCaaaGCGCCGCcg-UACUUCg- -3' miRNA: 3'- gUGCGgagCGCGGCGcaaAUGAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 115862 | 0.68 | 0.944611 |
Target: 5'- gCACGCCUCGUcaaacacgGCCGCGUUa------- -3' miRNA: 3'- -GUGCGGAGCG--------CGGCGCAAaugaagac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 118017 | 0.67 | 0.956731 |
Target: 5'- gGCGUgUCGCuGCCGCGgg-ACUcggugCUGg -3' miRNA: 3'- gUGCGgAGCG-CGGCGCaaaUGAa----GAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 118491 | 0.69 | 0.90838 |
Target: 5'- cCACGCCgauccgCGUGUCGUGU--GCUUCg- -3' miRNA: 3'- -GUGCGGa-----GCGCGGCGCAaaUGAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 119610 | 0.68 | 0.948874 |
Target: 5'- aGCGUCUCGUGCUGCagguggacGUUUACccaCUGg -3' miRNA: 3'- gUGCGGAGCGCGGCG--------CAAAUGaa-GAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 120096 | 0.66 | 0.981955 |
Target: 5'- -cCGUgUCGUGCUGCGaUUugUUCUc -3' miRNA: 3'- guGCGgAGCGCGGCGCaAAugAAGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 125473 | 0.69 | 0.919879 |
Target: 5'- aCGCGCC-CGCGCCGCc----CUUCa- -3' miRNA: 3'- -GUGCGGaGCGCGGCGcaaauGAAGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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