miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 3' -54.5 NC_003521.1 + 136824 1.07 0.008596
Target:  5'- uCACGCCUCGCGCCGCGUUUACUUCUGc -3'
miRNA:   3'- -GUGCGGAGCGCGGCGCAAAUGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 164607 0.75 0.641346
Target:  5'- gCGCGCCcagggCGUGCCgGCGg--GCUUCUGg -3'
miRNA:   3'- -GUGCGGa----GCGCGG-CGCaaaUGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 87968 0.75 0.650378
Target:  5'- cUACGCCUCGCGgCGCGaggACUcggugaaUCUGg -3'
miRNA:   3'- -GUGCGGAGCGCgGCGCaaaUGA-------AGAC- -5'
14086 3' -54.5 NC_003521.1 + 233739 0.74 0.681364
Target:  5'- gACGCCgC-CGCCGCGUcUGCUUCUu -3'
miRNA:   3'- gUGCGGaGcGCGGCGCAaAUGAAGAc -5'
14086 3' -54.5 NC_003521.1 + 139852 0.73 0.720755
Target:  5'- aACGCCgugCGCGCCGgGcacggcGCUUCUGu -3'
miRNA:   3'- gUGCGGa--GCGCGGCgCaaa---UGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 200342 0.73 0.720755
Target:  5'- gGCGCCguggCGCGCCGCGgacACaUCUa -3'
miRNA:   3'- gUGCGGa---GCGCGGCGCaaaUGaAGAc -5'
14086 3' -54.5 NC_003521.1 + 85937 0.7 0.868533
Target:  5'- gCACGuUCUCGCGCCGCGagcGCUUa-- -3'
miRNA:   3'- -GUGC-GGAGCGCGGCGCaaaUGAAgac -5'
14086 3' -54.5 NC_003521.1 + 74611 0.7 0.882681
Target:  5'- gCGCGCCUCGcCGCCGCGccaACa---- -3'
miRNA:   3'- -GUGCGGAGC-GCGGCGCaaaUGaagac -5'
14086 3' -54.5 NC_003521.1 + 441 0.69 0.902289
Target:  5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3'
miRNA:   3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5'
14086 3' -54.5 NC_003521.1 + 200668 0.69 0.902289
Target:  5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3'
miRNA:   3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5'
14086 3' -54.5 NC_003521.1 + 174579 0.69 0.902289
Target:  5'- uCACGaaguuCUCGCacGCCGCGUUUACgUUCa- -3'
miRNA:   3'- -GUGCg----GAGCG--CGGCGCAAAUG-AAGac -5'
14086 3' -54.5 NC_003521.1 + 118491 0.69 0.90838
Target:  5'- cCACGCCgauccgCGUGUCGUGU--GCUUCg- -3'
miRNA:   3'- -GUGCGGa-----GCGCGGCGCAaaUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 32881 0.69 0.914244
Target:  5'- gGCGCC-CGCGCCGCcggUGCUg--- -3'
miRNA:   3'- gUGCGGaGCGCGGCGcaaAUGAagac -5'
14086 3' -54.5 NC_003521.1 + 1617 0.69 0.914244
Target:  5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3'
miRNA:   3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5'
14086 3' -54.5 NC_003521.1 + 46551 0.69 0.914244
Target:  5'- aGgGCCUCGCGCCGgGUg-----CUGa -3'
miRNA:   3'- gUgCGGAGCGCGGCgCAaaugaaGAC- -5'
14086 3' -54.5 NC_003521.1 + 201844 0.69 0.914244
Target:  5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3'
miRNA:   3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5'
14086 3' -54.5 NC_003521.1 + 125473 0.69 0.919879
Target:  5'- aCGCGCC-CGCGCCGCc----CUUCa- -3'
miRNA:   3'- -GUGCGGaGCGCGGCGcaaauGAAGac -5'
14086 3' -54.5 NC_003521.1 + 156618 0.69 0.919879
Target:  5'- uCGCGCCUgGUGCUGCGcg-ACgccCUGg -3'
miRNA:   3'- -GUGCGGAgCGCGGCGCaaaUGaa-GAC- -5'
14086 3' -54.5 NC_003521.1 + 11554 0.68 0.930461
Target:  5'- cUACGCCUCcgGCGCCGuCGUgcgccggACU-CUGc -3'
miRNA:   3'- -GUGCGGAG--CGCGGC-GCAaa-----UGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 137483 0.68 0.935407
Target:  5'- gGCGCCggCGUGUCGCGgcgccGCgaggUCUGg -3'
miRNA:   3'- gUGCGGa-GCGCGGCGCaaa--UGa---AGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.