miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 3' -54.5 NC_003521.1 + 7623 0.68 0.940123
Target:  5'- cUAUGCUaCGCGCUGCGc---CUUCUGg -3'
miRNA:   3'- -GUGCGGaGCGCGGCGCaaauGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 213312 0.68 0.944611
Target:  5'- gGCGCCUCGgGCCGCacgccccccGUggAgUUCUc -3'
miRNA:   3'- gUGCGGAGCgCGGCG---------CAaaUgAAGAc -5'
14086 3' -54.5 NC_003521.1 + 105401 0.68 0.944611
Target:  5'- gGCGCCaaaUCGCGCCGgGUgaUUGgUUCc- -3'
miRNA:   3'- gUGCGG---AGCGCGGCgCA--AAUgAAGac -5'
14086 3' -54.5 NC_003521.1 + 115862 0.68 0.944611
Target:  5'- gCACGCCUCGUcaaacacgGCCGCGUUa------- -3'
miRNA:   3'- -GUGCGGAGCG--------CGGCGCAAaugaagac -5'
14086 3' -54.5 NC_003521.1 + 119610 0.68 0.948874
Target:  5'- aGCGUCUCGUGCUGCagguggacGUUUACccaCUGg -3'
miRNA:   3'- gUGCGGAGCGCGGCG--------CAAAUGaa-GAC- -5'
14086 3' -54.5 NC_003521.1 + 207262 0.68 0.951724
Target:  5'- gGCGCuuCUCGUGCCuGCGUcaggccggccgccuUUACUUCa- -3'
miRNA:   3'- gUGCG--GAGCGCGG-CGCA--------------AAUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 223677 0.67 0.956731
Target:  5'- --gGCCUCGCGCCGC---UGCUg--- -3'
miRNA:   3'- gugCGGAGCGCGGCGcaaAUGAagac -5'
14086 3' -54.5 NC_003521.1 + 226347 0.67 0.956731
Target:  5'- gCGCGCCccgcggguaGCGCCGCGggagcgGCggCUGa -3'
miRNA:   3'- -GUGCGGag-------CGCGGCGCaaa---UGaaGAC- -5'
14086 3' -54.5 NC_003521.1 + 118017 0.67 0.956731
Target:  5'- gGCGUgUCGCuGCCGCGgg-ACUcggugCUGg -3'
miRNA:   3'- gUGCGgAGCG-CGGCGCaaaUGAa----GAC- -5'
14086 3' -54.5 NC_003521.1 + 166644 0.67 0.963721
Target:  5'- gCGCGCCggGCGCCGCGgc-GCa---- -3'
miRNA:   3'- -GUGCGGagCGCGGCGCaaaUGaagac -5'
14086 3' -54.5 NC_003521.1 + 111851 0.67 0.963721
Target:  5'- uGCGCaaaGCGCCGCcg-UACUUCg- -3'
miRNA:   3'- gUGCGgagCGCGGCGcaaAUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 154236 0.67 0.963721
Target:  5'- aGCGCUUCGcCGCCGaGg--ACUUCUc -3'
miRNA:   3'- gUGCGGAGC-GCGGCgCaaaUGAAGAc -5'
14086 3' -54.5 NC_003521.1 + 17605 0.67 0.963721
Target:  5'- aCGCGCCagGCGUCGCGgcguaUACgaacccgCUGg -3'
miRNA:   3'- -GUGCGGagCGCGGCGCaa---AUGaa-----GAC- -5'
14086 3' -54.5 NC_003521.1 + 48760 0.67 0.966903
Target:  5'- gACGCCUCacaaacCGCCGCGg--ACgccgcgUCUGc -3'
miRNA:   3'- gUGCGGAGc-----GCGGCGCaaaUGa-----AGAC- -5'
14086 3' -54.5 NC_003521.1 + 149379 0.67 0.969882
Target:  5'- uGCGCCUCGUcacccCCGUGg--GCUUCg- -3'
miRNA:   3'- gUGCGGAGCGc----GGCGCaaaUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 175207 0.66 0.975256
Target:  5'- aGCuCCUCGCggGCCGUGUUUaGCUgCUGu -3'
miRNA:   3'- gUGcGGAGCG--CGGCGCAAA-UGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 198815 0.66 0.977664
Target:  5'- gGCGUCugUCGUGCCGcCGUgUUGCUgCUGc -3'
miRNA:   3'- gUGCGG--AGCGCGGC-GCA-AAUGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 128463 0.66 0.979895
Target:  5'- gACGCCgcaGcCGCCGCGUgcgUACggUgUGg -3'
miRNA:   3'- gUGCGGag-C-GCGGCGCAa--AUGa-AgAC- -5'
14086 3' -54.5 NC_003521.1 + 137516 0.66 0.979895
Target:  5'- gACGUgcaGCGCCGCGUccGCUUCc- -3'
miRNA:   3'- gUGCGgagCGCGGCGCAaaUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 153251 0.66 0.979895
Target:  5'- cUugGCgUCGCuaCCGCGgucgUGCUUCUc -3'
miRNA:   3'- -GugCGgAGCGc-GGCGCaa--AUGAAGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.