Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 128463 | 0.66 | 0.979895 |
Target: 5'- gACGCCgcaGcCGCCGCGUgcgUACggUgUGg -3' miRNA: 3'- gUGCGGag-C-GCGGCGCAa--AUGa-AgAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 136824 | 1.07 | 0.008596 |
Target: 5'- uCACGCCUCGCGCCGCGUUUACUUCUGc -3' miRNA: 3'- -GUGCGGAGCGCGGCGCAAAUGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 137483 | 0.68 | 0.935407 |
Target: 5'- gGCGCCggCGUGUCGCGgcgccGCgaggUCUGg -3' miRNA: 3'- gUGCGGa-GCGCGGCGCaaa--UGa---AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 137516 | 0.66 | 0.979895 |
Target: 5'- gACGUgcaGCGCCGCGUccGCUUCc- -3' miRNA: 3'- gUGCGgagCGCGGCGCAaaUGAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 139852 | 0.73 | 0.720755 |
Target: 5'- aACGCCgugCGCGCCGgGcacggcGCUUCUGu -3' miRNA: 3'- gUGCGGa--GCGCGGCgCaaa---UGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 149379 | 0.67 | 0.969882 |
Target: 5'- uGCGCCUCGUcacccCCGUGg--GCUUCg- -3' miRNA: 3'- gUGCGGAGCGc----GGCGCaaaUGAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 149961 | 0.66 | 0.981955 |
Target: 5'- gCGCGCUUCGCguuggcacuguGCCGCGcaUGCU-CUa -3' miRNA: 3'- -GUGCGGAGCG-----------CGGCGCaaAUGAaGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 153251 | 0.66 | 0.979895 |
Target: 5'- cUugGCgUCGCuaCCGCGgucgUGCUUCUc -3' miRNA: 3'- -GugCGgAGCGc-GGCGCaa--AUGAAGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 154236 | 0.67 | 0.963721 |
Target: 5'- aGCGCUUCGcCGCCGaGg--ACUUCUc -3' miRNA: 3'- gUGCGGAGC-GCGGCgCaaaUGAAGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 156618 | 0.69 | 0.919879 |
Target: 5'- uCGCGCCUgGUGCUGCGcg-ACgccCUGg -3' miRNA: 3'- -GUGCGGAgCGCGGCGCaaaUGaa-GAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 164607 | 0.75 | 0.641346 |
Target: 5'- gCGCGCCcagggCGUGCCgGCGg--GCUUCUGg -3' miRNA: 3'- -GUGCGGa----GCGCGG-CGCaaaUGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 166644 | 0.67 | 0.963721 |
Target: 5'- gCGCGCCggGCGCCGCGgc-GCa---- -3' miRNA: 3'- -GUGCGGagCGCGGCGCaaaUGaagac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 167161 | 0.66 | 0.981756 |
Target: 5'- gGCGCCUCgggcgucuuggagGCgGCCGCGgcggaggcCUUCUGc -3' miRNA: 3'- gUGCGGAG-------------CG-CGGCGCaaau----GAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 174579 | 0.69 | 0.902289 |
Target: 5'- uCACGaaguuCUCGCacGCCGCGUUUACgUUCa- -3' miRNA: 3'- -GUGCg----GAGCG--CGGCGCAAAUG-AAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 175207 | 0.66 | 0.975256 |
Target: 5'- aGCuCCUCGCggGCCGUGUUUaGCUgCUGu -3' miRNA: 3'- gUGcGGAGCG--CGGCGCAAA-UGAaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 196013 | 0.66 | 0.979895 |
Target: 5'- --gGCCUCGUgcaGCUGCGUgaGCaUCUGc -3' miRNA: 3'- gugCGGAGCG---CGGCGCAaaUGaAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 198815 | 0.66 | 0.977664 |
Target: 5'- gGCGUCugUCGUGCCGcCGUgUUGCUgCUGc -3' miRNA: 3'- gUGCGG--AGCGCGGC-GCA-AAUGAaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 200342 | 0.73 | 0.720755 |
Target: 5'- gGCGCCguggCGCGCCGCGgacACaUCUa -3' miRNA: 3'- gUGCGGa---GCGCGGCGCaaaUGaAGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 200668 | 0.69 | 0.902289 |
Target: 5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3' miRNA: 3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 201844 | 0.69 | 0.914244 |
Target: 5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3' miRNA: 3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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