miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 3' -54.5 NC_003521.1 + 125473 0.69 0.919879
Target:  5'- aCGCGCC-CGCGCCGCc----CUUCa- -3'
miRNA:   3'- -GUGCGGaGCGCGGCGcaaauGAAGac -5'
14086 3' -54.5 NC_003521.1 + 105401 0.68 0.944611
Target:  5'- gGCGCCaaaUCGCGCCGgGUgaUUGgUUCc- -3'
miRNA:   3'- gUGCGG---AGCGCGGCgCA--AAUgAAGac -5'
14086 3' -54.5 NC_003521.1 + 207262 0.68 0.951724
Target:  5'- gGCGCuuCUCGUGCCuGCGUcaggccggccgccuUUACUUCa- -3'
miRNA:   3'- gUGCG--GAGCGCGG-CGCA--------------AAUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 118017 0.67 0.956731
Target:  5'- gGCGUgUCGCuGCCGCGgg-ACUcggugCUGg -3'
miRNA:   3'- gUGCGgAGCG-CGGCGCaaaUGAa----GAC- -5'
14086 3' -54.5 NC_003521.1 + 111851 0.67 0.963721
Target:  5'- uGCGCaaaGCGCCGCcg-UACUUCg- -3'
miRNA:   3'- gUGCGgagCGCGGCGcaaAUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 166644 0.67 0.963721
Target:  5'- gCGCGCCggGCGCCGCGgc-GCa---- -3'
miRNA:   3'- -GUGCGGagCGCGGCGCaaaUGaagac -5'
14086 3' -54.5 NC_003521.1 + 48760 0.67 0.966903
Target:  5'- gACGCCUCacaaacCGCCGCGg--ACgccgcgUCUGc -3'
miRNA:   3'- gUGCGGAGc-----GCGGCGCaaaUGa-----AGAC- -5'
14086 3' -54.5 NC_003521.1 + 175207 0.66 0.975256
Target:  5'- aGCuCCUCGCggGCCGUGUUUaGCUgCUGu -3'
miRNA:   3'- gUGcGGAGCG--CGGCGCAAA-UGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 198815 0.66 0.977664
Target:  5'- gGCGUCugUCGUGCCGcCGUgUUGCUgCUGc -3'
miRNA:   3'- gUGCGG--AGCGCGGC-GCA-AAUGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 213312 0.68 0.944611
Target:  5'- gGCGCCUCGgGCCGCacgccccccGUggAgUUCUc -3'
miRNA:   3'- gUGCGGAGCgCGGCG---------CAaaUgAAGAc -5'
14086 3' -54.5 NC_003521.1 + 11554 0.68 0.930461
Target:  5'- cUACGCCUCcgGCGCCGuCGUgcgccggACU-CUGc -3'
miRNA:   3'- -GUGCGGAG--CGCGGC-GCAaa-----UGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 1617 0.69 0.914244
Target:  5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3'
miRNA:   3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5'
14086 3' -54.5 NC_003521.1 + 47994 0.66 0.983853
Target:  5'- cCACGga-CGCGCCGCcgg-GCUUCUGc -3'
miRNA:   3'- -GUGCggaGCGCGGCGcaaaUGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 164607 0.75 0.641346
Target:  5'- gCGCGCCcagggCGUGCCgGCGg--GCUUCUGg -3'
miRNA:   3'- -GUGCGGa----GCGCGG-CGCaaaUGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 87968 0.75 0.650378
Target:  5'- cUACGCCUCGCGgCGCGaggACUcggugaaUCUGg -3'
miRNA:   3'- -GUGCGGAGCGCgGCGCaaaUGA-------AGAC- -5'
14086 3' -54.5 NC_003521.1 + 139852 0.73 0.720755
Target:  5'- aACGCCgugCGCGCCGgGcacggcGCUUCUGu -3'
miRNA:   3'- gUGCGGa--GCGCGGCgCaaa---UGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 200342 0.73 0.720755
Target:  5'- gGCGCCguggCGCGCCGCGgacACaUCUa -3'
miRNA:   3'- gUGCGGa---GCGCGGCGCaaaUGaAGAc -5'
14086 3' -54.5 NC_003521.1 + 441 0.69 0.902289
Target:  5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3'
miRNA:   3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5'
14086 3' -54.5 NC_003521.1 + 174579 0.69 0.902289
Target:  5'- uCACGaaguuCUCGCacGCCGCGUUUACgUUCa- -3'
miRNA:   3'- -GUGCg----GAGCG--CGGCGCAAAUG-AAGac -5'
14086 3' -54.5 NC_003521.1 + 118491 0.69 0.90838
Target:  5'- cCACGCCgauccgCGUGUCGUGU--GCUUCg- -3'
miRNA:   3'- -GUGCGGa-----GCGCGGCGCAaaUGAAGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.