miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 3' -54.5 NC_003521.1 + 233739 0.74 0.681364
Target:  5'- gACGCCgC-CGCCGCGUcUGCUUCUu -3'
miRNA:   3'- gUGCGGaGcGCGGCGCAaAUGAAGAc -5'
14086 3' -54.5 NC_003521.1 + 226347 0.67 0.956731
Target:  5'- gCGCGCCccgcggguaGCGCCGCGggagcgGCggCUGa -3'
miRNA:   3'- -GUGCGGag-------CGCGGCGCaaa---UGaaGAC- -5'
14086 3' -54.5 NC_003521.1 + 223677 0.67 0.956731
Target:  5'- --gGCCUCGCGCCGC---UGCUg--- -3'
miRNA:   3'- gugCGGAGCGCGGCGcaaAUGAagac -5'
14086 3' -54.5 NC_003521.1 + 213312 0.68 0.944611
Target:  5'- gGCGCCUCGgGCCGCacgccccccGUggAgUUCUc -3'
miRNA:   3'- gUGCGGAGCgCGGCG---------CAaaUgAAGAc -5'
14086 3' -54.5 NC_003521.1 + 207262 0.68 0.951724
Target:  5'- gGCGCuuCUCGUGCCuGCGUcaggccggccgccuUUACUUCa- -3'
miRNA:   3'- gUGCG--GAGCGCGG-CGCA--------------AAUGAAGac -5'
14086 3' -54.5 NC_003521.1 + 205869 0.66 0.979895
Target:  5'- uCugGCCgaccucugcgUGCGCCGCGacUACgagggUCUGc -3'
miRNA:   3'- -GugCGGa---------GCGCGGCGCaaAUGa----AGAC- -5'
14086 3' -54.5 NC_003521.1 + 202824 0.66 0.979895
Target:  5'- -cCGCCUCaGCGCCGgCGacUACUcuaccgucaauUCUGa -3'
miRNA:   3'- guGCGGAG-CGCGGC-GCaaAUGA-----------AGAC- -5'
14086 3' -54.5 NC_003521.1 + 201844 0.69 0.914244
Target:  5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3'
miRNA:   3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5'
14086 3' -54.5 NC_003521.1 + 200668 0.69 0.902289
Target:  5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3'
miRNA:   3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5'
14086 3' -54.5 NC_003521.1 + 200342 0.73 0.720755
Target:  5'- gGCGCCguggCGCGCCGCGgacACaUCUa -3'
miRNA:   3'- gUGCGGa---GCGCGGCGCaaaUGaAGAc -5'
14086 3' -54.5 NC_003521.1 + 198815 0.66 0.977664
Target:  5'- gGCGUCugUCGUGCCGcCGUgUUGCUgCUGc -3'
miRNA:   3'- gUGCGG--AGCGCGGC-GCA-AAUGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 196013 0.66 0.979895
Target:  5'- --gGCCUCGUgcaGCUGCGUgaGCaUCUGc -3'
miRNA:   3'- gugCGGAGCG---CGGCGCAaaUGaAGAC- -5'
14086 3' -54.5 NC_003521.1 + 175207 0.66 0.975256
Target:  5'- aGCuCCUCGCggGCCGUGUUUaGCUgCUGu -3'
miRNA:   3'- gUGcGGAGCG--CGGCGCAAA-UGAaGAC- -5'
14086 3' -54.5 NC_003521.1 + 174579 0.69 0.902289
Target:  5'- uCACGaaguuCUCGCacGCCGCGUUUACgUUCa- -3'
miRNA:   3'- -GUGCg----GAGCG--CGGCGCAAAUG-AAGac -5'
14086 3' -54.5 NC_003521.1 + 167161 0.66 0.981756
Target:  5'- gGCGCCUCgggcgucuuggagGCgGCCGCGgcggaggcCUUCUGc -3'
miRNA:   3'- gUGCGGAG-------------CG-CGGCGCaaau----GAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 166644 0.67 0.963721
Target:  5'- gCGCGCCggGCGCCGCGgc-GCa---- -3'
miRNA:   3'- -GUGCGGagCGCGGCGCaaaUGaagac -5'
14086 3' -54.5 NC_003521.1 + 164607 0.75 0.641346
Target:  5'- gCGCGCCcagggCGUGCCgGCGg--GCUUCUGg -3'
miRNA:   3'- -GUGCGGa----GCGCGG-CGCaaaUGAAGAC- -5'
14086 3' -54.5 NC_003521.1 + 156618 0.69 0.919879
Target:  5'- uCGCGCCUgGUGCUGCGcg-ACgccCUGg -3'
miRNA:   3'- -GUGCGGAgCGCGGCGCaaaUGaa-GAC- -5'
14086 3' -54.5 NC_003521.1 + 154236 0.67 0.963721
Target:  5'- aGCGCUUCGcCGCCGaGg--ACUUCUc -3'
miRNA:   3'- gUGCGGAGC-GCGGCgCaaaUGAAGAc -5'
14086 3' -54.5 NC_003521.1 + 153251 0.66 0.979895
Target:  5'- cUugGCgUCGCuaCCGCGgucgUGCUUCUc -3'
miRNA:   3'- -GugCGgAGCGc-GGCGCaa--AUGAAGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.