Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14086 | 3' | -54.5 | NC_003521.1 | + | 136824 | 1.07 | 0.008596 |
Target: 5'- uCACGCCUCGCGCCGCGUUUACUUCUGc -3' miRNA: 3'- -GUGCGGAGCGCGGCGCAAAUGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 175207 | 0.66 | 0.975256 |
Target: 5'- aGCuCCUCGCggGCCGUGUUUaGCUgCUGu -3' miRNA: 3'- gUGcGGAGCG--CGGCGCAAA-UGAaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 128463 | 0.66 | 0.979895 |
Target: 5'- gACGCCgcaGcCGCCGCGUgcgUACggUgUGg -3' miRNA: 3'- gUGCGGag-C-GCGGCGCAa--AUGa-AgAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 47994 | 0.66 | 0.983853 |
Target: 5'- cCACGga-CGCGCCGCcgg-GCUUCUGc -3' miRNA: 3'- -GUGCggaGCGCGGCGcaaaUGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 200342 | 0.73 | 0.720755 |
Target: 5'- gGCGCCguggCGCGCCGCGgacACaUCUa -3' miRNA: 3'- gUGCGGa---GCGCGGCGCaaaUGaAGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 441 | 0.69 | 0.902289 |
Target: 5'- gCACGCCU-GCGCuucuCGcCGUUUGCcUCUGa -3' miRNA: 3'- -GUGCGGAgCGCG----GC-GCAAAUGaAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 118491 | 0.69 | 0.90838 |
Target: 5'- cCACGCCgauccgCGUGUCGUGU--GCUUCg- -3' miRNA: 3'- -GUGCGGa-----GCGCGGCGCAaaUGAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 1617 | 0.69 | 0.914244 |
Target: 5'- aGCGCCU-GUGCUGCGggugGCUguuUCUGg -3' miRNA: 3'- gUGCGGAgCGCGGCGCaaa-UGA---AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 105401 | 0.68 | 0.944611 |
Target: 5'- gGCGCCaaaUCGCGCCGgGUgaUUGgUUCc- -3' miRNA: 3'- gUGCGG---AGCGCGGCgCA--AAUgAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 48760 | 0.67 | 0.966903 |
Target: 5'- gACGCCUCacaaacCGCCGCGg--ACgccgcgUCUGc -3' miRNA: 3'- gUGCGGAGc-----GCGGCGCaaaUGa-----AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 118017 | 0.67 | 0.956731 |
Target: 5'- gGCGUgUCGCuGCCGCGgg-ACUcggugCUGg -3' miRNA: 3'- gUGCGgAGCG-CGGCGCaaaUGAa----GAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 213312 | 0.68 | 0.944611 |
Target: 5'- gGCGCCUCGgGCCGCacgccccccGUggAgUUCUc -3' miRNA: 3'- gUGCGGAGCgCGGCG---------CAaaUgAAGAc -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 164607 | 0.75 | 0.641346 |
Target: 5'- gCGCGCCcagggCGUGCCgGCGg--GCUUCUGg -3' miRNA: 3'- -GUGCGGa----GCGCGG-CGCaaaUGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 111851 | 0.67 | 0.963721 |
Target: 5'- uGCGCaaaGCGCCGCcg-UACUUCg- -3' miRNA: 3'- gUGCGgagCGCGGCGcaaAUGAAGac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 87968 | 0.75 | 0.650378 |
Target: 5'- cUACGCCUCGCGgCGCGaggACUcggugaaUCUGg -3' miRNA: 3'- -GUGCGGAGCGCgGCGCaaaUGA-------AGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 11554 | 0.68 | 0.930461 |
Target: 5'- cUACGCCUCcgGCGCCGuCGUgcgccggACU-CUGc -3' miRNA: 3'- -GUGCGGAG--CGCGGC-GCAaa-----UGAaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 166644 | 0.67 | 0.963721 |
Target: 5'- gCGCGCCggGCGCCGCGgc-GCa---- -3' miRNA: 3'- -GUGCGGagCGCGGCGCaaaUGaagac -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 198815 | 0.66 | 0.977664 |
Target: 5'- gGCGUCugUCGUGCCGcCGUgUUGCUgCUGc -3' miRNA: 3'- gUGCGG--AGCGCGGC-GCA-AAUGAaGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 139852 | 0.73 | 0.720755 |
Target: 5'- aACGCCgugCGCGCCGgGcacggcGCUUCUGu -3' miRNA: 3'- gUGCGGa--GCGCGGCgCaaa---UGAAGAC- -5' |
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14086 | 3' | -54.5 | NC_003521.1 | + | 174579 | 0.69 | 0.902289 |
Target: 5'- uCACGaaguuCUCGCacGCCGCGUUUACgUUCa- -3' miRNA: 3'- -GUGCg----GAGCG--CGGCGCAAAUG-AAGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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