miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 6383 0.71 0.815584
Target:  5'- uCGCGGAGggGCGCcgcaGCUacCGCGGCGGc -3'
miRNA:   3'- -GCGUCUUuaCGUGcc--UGA--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 209540 0.71 0.823872
Target:  5'- cCGCGGuuAUGCgcccgGCGGGgUgGCGGCGa -3'
miRNA:   3'- -GCGUCuuUACG-----UGCCUgAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 195170 0.71 0.831998
Target:  5'- aGCGGguGUGCGcCGGACcCcgcggagccgGCGGCGGu -3'
miRNA:   3'- gCGUCuuUACGU-GCCUGaG----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 111240 0.71 0.831998
Target:  5'- uCGCGGccg-GCGCGG---CGCGGCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCugaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 27244 0.71 0.839955
Target:  5'- gGC-GAGA-GCACGGGCUCGCcgaugauGCGGc -3'
miRNA:   3'- gCGuCUUUaCGUGCCUGAGCGc------CGCC- -5'
14086 5' -55.4 NC_003521.1 + 83585 0.71 0.839955
Target:  5'- uGCucu--UGguCGGAcCUCGCGGCGGc -3'
miRNA:   3'- gCGucuuuACguGCCU-GAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 177754 0.71 0.839955
Target:  5'- gCGCAGc--UGUACGGGgUCGCGGUc- -3'
miRNA:   3'- -GCGUCuuuACGUGCCUgAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 221802 0.71 0.839955
Target:  5'- gGCGG----GCAUGGGCUcCGuCGGCGGg -3'
miRNA:   3'- gCGUCuuuaCGUGCCUGA-GC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 222786 0.7 0.847736
Target:  5'- gCGCAGAGGaacuucUGCACGugguagcgcGGCUCGgUGGUGGa -3'
miRNA:   3'- -GCGUCUUU------ACGUGC---------CUGAGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 187184 0.7 0.847736
Target:  5'- uGCGGAGAcggcccgccUGCAUcggGGACauUCGuCGGCGGa -3'
miRNA:   3'- gCGUCUUU---------ACGUG---CCUG--AGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16708 0.7 0.847736
Target:  5'- gGCAGAc--GCGCGuGAUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGC-CUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 164743 0.7 0.85383
Target:  5'- gCGCGGGAGggggGCAucgcggucgcCGGGCgaaccauagugaCGCGGCGGg -3'
miRNA:   3'- -GCGUCUUUa---CGU----------GCCUGa-----------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 122495 0.7 0.855335
Target:  5'- gGCGGGuucUGCA-GGGCcaaCGCGGCGGc -3'
miRNA:   3'- gCGUCUuu-ACGUgCCUGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 92005 0.7 0.855335
Target:  5'- aGCGGGAGcggcgagGCGCGGcgGCg-GCGGCGGu -3'
miRNA:   3'- gCGUCUUUa------CGUGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 76967 0.7 0.855335
Target:  5'- uCGCGGccGAUGCGCGuGauGCUgGCGGCGa -3'
miRNA:   3'- -GCGUCu-UUACGUGC-C--UGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 171620 0.7 0.862013
Target:  5'- gGCGGGAGUGCcgccgacguCGGguaugucuagcgcGC-CGCGGCGGg -3'
miRNA:   3'- gCGUCUUUACGu--------GCC-------------UGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 228719 0.7 0.862746
Target:  5'- uCGCAGAucAUGUuguCGGGCUgCGUGGUGa -3'
miRNA:   3'- -GCGUCUu-UACGu--GCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 31161 0.7 0.862746
Target:  5'- gCGCAgcGAGAUGCAacgguaguCGGGgaUGCGGUGGa -3'
miRNA:   3'- -GCGU--CUUUACGU--------GCCUgaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 32130 0.7 0.862746
Target:  5'- gGCAGGuagcggGCGCGGuGCaccaaGCGGCGGa -3'
miRNA:   3'- gCGUCUuua---CGUGCC-UGag---CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 19955 0.7 0.862746
Target:  5'- uGguGAGGUGgC-CGGGCUgGCGGUGa -3'
miRNA:   3'- gCguCUUUAC-GuGCCUGAgCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.