miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 5' -50.2 NC_003521.1 + 121179 0.71 0.968415
Target:  5'- --gGCGGCcAGCGCGUCGUaCUGGCg- -3'
miRNA:   3'- aggUGUUGuUCGUGUAGUA-GACCGac -5'
14091 5' -50.2 NC_003521.1 + 140794 0.7 0.971127
Target:  5'- -gCugGACGAGCcgcugcuGCGUCGUCUGGUg- -3'
miRNA:   3'- agGugUUGUUCG-------UGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 36995 0.7 0.971418
Target:  5'- aUCCGCGACGAGgGCGUCG-C-GGCg- -3'
miRNA:   3'- -AGGUGUUGUUCgUGUAGUaGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 140084 0.7 0.971418
Target:  5'- gCC-CAGCucggGGUGCAUCAUCUGGUa- -3'
miRNA:   3'- aGGuGUUGu---UCGUGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 32088 0.7 0.97421
Target:  5'- gCCACGGCcAGCGCcaugCGUUUGGCg- -3'
miRNA:   3'- aGGUGUUGuUCGUGua--GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 19795 0.7 0.976798
Target:  5'- aCCACAagaugGCGAGCGcCGUCGcaguUCUGGCc- -3'
miRNA:   3'- aGGUGU-----UGUUCGU-GUAGU----AGACCGac -5'
14091 5' -50.2 NC_003521.1 + 93938 0.7 0.981395
Target:  5'- aCCGCuGCccGC-CGUCGUCUGGCUu -3'
miRNA:   3'- aGGUGuUGuuCGuGUAGUAGACCGAc -5'
14091 5' -50.2 NC_003521.1 + 68087 0.7 0.981395
Target:  5'- cCCGCAagaagaagaGCAAGCGCAUC-UCcGaGCUGg -3'
miRNA:   3'- aGGUGU---------UGUUCGUGUAGuAGaC-CGAC- -5'
14091 5' -50.2 NC_003521.1 + 124371 0.7 0.981395
Target:  5'- cCCACcACGGcCGCGUCGUCgUGGUUGa -3'
miRNA:   3'- aGGUGuUGUUcGUGUAGUAG-ACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 987 0.7 0.981395
Target:  5'- gCCAcCGACAacAGCACGgcauggcCAUCUGGCg- -3'
miRNA:   3'- aGGU-GUUGU--UCGUGUa------GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 137537 0.69 0.983419
Target:  5'- uUCCACGuGCucuGGUACGUCAacuccuUCUGGCg- -3'
miRNA:   3'- -AGGUGU-UGu--UCGUGUAGU------AGACCGac -5'
14091 5' -50.2 NC_003521.1 + 138705 0.69 0.983419
Target:  5'- gCCugGGC-GGCACGggcgCUGGCUGg -3'
miRNA:   3'- aGGugUUGuUCGUGUaguaGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 11455 0.69 0.983419
Target:  5'- gCCACGaacgacguguACAAGCgACGUCA-CUGGCa- -3'
miRNA:   3'- aGGUGU----------UGUUCG-UGUAGUaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 25647 0.69 0.983419
Target:  5'- aCCACGACAucaggcGGCAgAUCGUgCUGGUc- -3'
miRNA:   3'- aGGUGUUGU------UCGUgUAGUA-GACCGac -5'
14091 5' -50.2 NC_003521.1 + 20434 0.69 0.985273
Target:  5'- gCCugGGCA---GCGUCuUCUGGCUGg -3'
miRNA:   3'- aGGugUUGUucgUGUAGuAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 167924 0.69 0.985273
Target:  5'- gCCGCGAUcgagGGGUACGUCAggaGGCUGa -3'
miRNA:   3'- aGGUGUUG----UUCGUGUAGUagaCCGAC- -5'
14091 5' -50.2 NC_003521.1 + 148917 0.69 0.985273
Target:  5'- gCCGCGGCAucgAGCACcgCAgcgccgugCUGGCg- -3'
miRNA:   3'- aGGUGUUGU---UCGUGuaGUa-------GACCGac -5'
14091 5' -50.2 NC_003521.1 + 113796 0.69 0.986964
Target:  5'- -gCGCGACGGGCACcgcggcggcGUCGUCgGGCa- -3'
miRNA:   3'- agGUGUUGUUCGUG---------UAGUAGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 166719 0.69 0.988501
Target:  5'- gCCACAGCcAGC-UAUCAUCcuUGGCg- -3'
miRNA:   3'- aGGUGUUGuUCGuGUAGUAG--ACCGac -5'
14091 5' -50.2 NC_003521.1 + 236971 0.69 0.988501
Target:  5'- gUCgGCAACAGGUACggCGUC-GGCa- -3'
miRNA:   3'- -AGgUGUUGUUCGUGuaGUAGaCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.