Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14091 | 5' | -50.2 | NC_003521.1 | + | 134554 | 1.09 | 0.013612 |
Target: 5'- uUCCACAACAAGCACAUCAUCUGGCUGu -3' miRNA: 3'- -AGGUGUUGUUCGUGUAGUAGACCGAC- -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 121591 | 0.79 | 0.668728 |
Target: 5'- uUCUcCAGCGAGCACAcCAgCUGGCUGg -3' miRNA: 3'- -AGGuGUUGUUCGUGUaGUaGACCGAC- -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 17009 | 0.76 | 0.788893 |
Target: 5'- cCCGCGguggcggcggcGCAGGCcCGUCGUCUGGCg- -3' miRNA: 3'- aGGUGU-----------UGUUCGuGUAGUAGACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 136872 | 0.76 | 0.807303 |
Target: 5'- gUCC-CGACAAGCGCAUC-UCgGGCUc -3' miRNA: 3'- -AGGuGUUGUUCGUGUAGuAGaCCGAc -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 154077 | 0.76 | 0.816263 |
Target: 5'- gCCGCAGaAAGCuCAUCGUCUGGCc- -3' miRNA: 3'- aGGUGUUgUUCGuGUAGUAGACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 196187 | 0.75 | 0.833647 |
Target: 5'- cUCCaACAcccACAGGCGCAUCAUCUGcaGCUc -3' miRNA: 3'- -AGG-UGU---UGUUCGUGUAGUAGAC--CGAc -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 166863 | 0.75 | 0.858261 |
Target: 5'- cUCgCACAGCAGGCACA-CGgugCUGGuCUGg -3' miRNA: 3'- -AG-GUGUUGUUCGUGUaGUa--GACC-GAC- -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 206053 | 0.74 | 0.866046 |
Target: 5'- uUCCGCGACAuGCACcUCAUC-GGCg- -3' miRNA: 3'- -AGGUGUUGUuCGUGuAGUAGaCCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 42063 | 0.74 | 0.887353 |
Target: 5'- cCCACGagcggcgcgaccaGCGAGCACGgcaagaccUCGUCUGGCa- -3' miRNA: 3'- aGGUGU-------------UGUUCGUGU--------AGUAGACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 206641 | 0.74 | 0.888052 |
Target: 5'- gCCACGAUAAGCugGUCAagUUGGCc- -3' miRNA: 3'- aGGUGUUGUUCGugUAGUa-GACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 99476 | 0.74 | 0.888053 |
Target: 5'- aUCCGgAGCucGCACAUCucguUCUGGCa- -3' miRNA: 3'- -AGGUgUUGuuCGUGUAGu---AGACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 27089 | 0.73 | 0.907931 |
Target: 5'- aCCACGGCcuucugcGGCGC--CGUCUGGCUGg -3' miRNA: 3'- aGGUGUUGu------UCGUGuaGUAGACCGAC- -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 98255 | 0.73 | 0.919953 |
Target: 5'- gCCACGGCGGGCACggCGagcCUGGCg- -3' miRNA: 3'- aGGUGUUGUUCGUGuaGUa--GACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 154640 | 0.72 | 0.936109 |
Target: 5'- uUCguCAGCAAGCACGUgCcgCUGGCc- -3' miRNA: 3'- -AGguGUUGUUCGUGUA-GuaGACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 131776 | 0.72 | 0.94563 |
Target: 5'- aUCCGCAGCGAGCGCAgCAg--GGUg- -3' miRNA: 3'- -AGGUGUUGUUCGUGUaGUagaCCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 153080 | 0.72 | 0.94563 |
Target: 5'- gUCCGCAGCuGGUcucggGCuUCGUCUGGCa- -3' miRNA: 3'- -AGGUGUUGuUCG-----UGuAGUAGACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 175763 | 0.71 | 0.953764 |
Target: 5'- gUCCAgGaauucguGCAGGCGCGUCAUUagccggGGCUGc -3' miRNA: 3'- -AGGUgU-------UGUUCGUGUAGUAGa-----CCGAC- -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 127691 | 0.71 | 0.961393 |
Target: 5'- gUCCAgAGCGagAGCACAUCGUCgcgcaccUGGCc- -3' miRNA: 3'- -AGGUgUUGU--UCGUGUAGUAG-------ACCGac -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 134553 | 0.71 | 0.966509 |
Target: 5'- cUCCACGGCGAuGCGCAgcUCGUCcagguaggggugcaGGCUGa -3' miRNA: 3'- -AGGUGUUGUU-CGUGU--AGUAGa-------------CCGAC- -5' |
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14091 | 5' | -50.2 | NC_003521.1 | + | 121179 | 0.71 | 0.968415 |
Target: 5'- --gGCGGCcAGCGCGUCGUaCUGGCg- -3' miRNA: 3'- aggUGUUGuUCGUGUAGUA-GACCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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