miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 5' -50.2 NC_003521.1 + 77776 0.68 0.991151
Target:  5'- gUCGCGGCAGGCGCAcUCGUCaaGCa- -3'
miRNA:   3'- aGGUGUUGUUCGUGU-AGUAGacCGac -5'
14091 5' -50.2 NC_003521.1 + 19795 0.7 0.976798
Target:  5'- aCCACAagaugGCGAGCGcCGUCGcaguUCUGGCc- -3'
miRNA:   3'- aGGUGU-----UGUUCGU-GUAGU----AGACCGac -5'
14091 5' -50.2 NC_003521.1 + 987 0.7 0.981395
Target:  5'- gCCAcCGACAacAGCACGgcauggcCAUCUGGCg- -3'
miRNA:   3'- aGGU-GUUGU--UCGUGUa------GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 138705 0.69 0.983419
Target:  5'- gCCugGGC-GGCACGggcgCUGGCUGg -3'
miRNA:   3'- aGGugUUGuUCGUGUaguaGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 137537 0.69 0.983419
Target:  5'- uUCCACGuGCucuGGUACGUCAacuccuUCUGGCg- -3'
miRNA:   3'- -AGGUGU-UGu--UCGUGUAGU------AGACCGac -5'
14091 5' -50.2 NC_003521.1 + 148917 0.69 0.985273
Target:  5'- gCCGCGGCAucgAGCACcgCAgcgccgugCUGGCg- -3'
miRNA:   3'- aGGUGUUGU---UCGUGuaGUa-------GACCGac -5'
14091 5' -50.2 NC_003521.1 + 167924 0.69 0.985273
Target:  5'- gCCGCGAUcgagGGGUACGUCAggaGGCUGa -3'
miRNA:   3'- aGGUGUUG----UUCGUGUAGUagaCCGAC- -5'
14091 5' -50.2 NC_003521.1 + 166719 0.69 0.988501
Target:  5'- gCCACAGCcAGC-UAUCAUCcuUGGCg- -3'
miRNA:   3'- aGGUGUUGuUCGuGUAGUAG--ACCGac -5'
14091 5' -50.2 NC_003521.1 + 236971 0.69 0.988501
Target:  5'- gUCgGCAACAGGUACggCGUC-GGCa- -3'
miRNA:   3'- -AGgUGUUGUUCGUGuaGUAGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 32088 0.7 0.97421
Target:  5'- gCCACGGCcAGCGCcaugCGUUUGGCg- -3'
miRNA:   3'- aGGUGUUGuUCGUGua--GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 140084 0.7 0.971418
Target:  5'- gCC-CAGCucggGGUGCAUCAUCUGGUa- -3'
miRNA:   3'- aGGuGUUGu---UCGUGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 121179 0.71 0.968415
Target:  5'- --gGCGGCcAGCGCGUCGUaCUGGCg- -3'
miRNA:   3'- aggUGUUGuUCGUGUAGUA-GACCGac -5'
14091 5' -50.2 NC_003521.1 + 136872 0.76 0.807303
Target:  5'- gUCC-CGACAAGCGCAUC-UCgGGCUc -3'
miRNA:   3'- -AGGuGUUGUUCGUGUAGuAGaCCGAc -5'
14091 5' -50.2 NC_003521.1 + 154077 0.76 0.816263
Target:  5'- gCCGCAGaAAGCuCAUCGUCUGGCc- -3'
miRNA:   3'- aGGUGUUgUUCGuGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 42063 0.74 0.887353
Target:  5'- cCCACGagcggcgcgaccaGCGAGCACGgcaagaccUCGUCUGGCa- -3'
miRNA:   3'- aGGUGU-------------UGUUCGUGU--------AGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 99476 0.74 0.888053
Target:  5'- aUCCGgAGCucGCACAUCucguUCUGGCa- -3'
miRNA:   3'- -AGGUgUUGuuCGUGUAGu---AGACCGac -5'
14091 5' -50.2 NC_003521.1 + 154640 0.72 0.936109
Target:  5'- uUCguCAGCAAGCACGUgCcgCUGGCc- -3'
miRNA:   3'- -AGguGUUGUUCGUGUA-GuaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 131776 0.72 0.94563
Target:  5'- aUCCGCAGCGAGCGCAgCAg--GGUg- -3'
miRNA:   3'- -AGGUGUUGUUCGUGUaGUagaCCGac -5'
14091 5' -50.2 NC_003521.1 + 134553 0.71 0.966509
Target:  5'- cUCCACGGCGAuGCGCAgcUCGUCcagguaggggugcaGGCUGa -3'
miRNA:   3'- -AGGUGUUGUU-CGUGU--AGUAGa-------------CCGAC- -5'
14091 5' -50.2 NC_003521.1 + 125638 0.71 0.968415
Target:  5'- cCCGCAGCAGGUAC-UCGUCgaUGGUcuUGa -3'
miRNA:   3'- aGGUGUUGUUCGUGuAGUAG--ACCG--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.