miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 5' -50.2 NC_003521.1 + 987 0.7 0.981395
Target:  5'- gCCAcCGACAacAGCACGgcauggcCAUCUGGCg- -3'
miRNA:   3'- aGGU-GUUGU--UCGUGUa------GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 2713 0.66 0.999129
Target:  5'- gCCACucguGCGggAGCGcCGUCAccgccucgCUGGCUGg -3'
miRNA:   3'- aGGUGu---UGU--UCGU-GUAGUa-------GACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 11455 0.69 0.983419
Target:  5'- gCCACGaacgacguguACAAGCgACGUCA-CUGGCa- -3'
miRNA:   3'- aGGUGU----------UGUUCG-UGUAGUaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 16609 0.68 0.994198
Target:  5'- aCCGCGACuacGgGCGUCAguaccgCUGGCUc -3'
miRNA:   3'- aGGUGUUGuu-CgUGUAGUa-----GACCGAc -5'
14091 5' -50.2 NC_003521.1 + 17009 0.76 0.788893
Target:  5'- cCCGCGguggcggcggcGCAGGCcCGUCGUCUGGCg- -3'
miRNA:   3'- aGGUGU-----------UGUUCGuGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 17733 0.66 0.999129
Target:  5'- cCCGCAGaucuacGCACGUUcgCUGGCc- -3'
miRNA:   3'- aGGUGUUguu---CGUGUAGuaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 19795 0.7 0.976798
Target:  5'- aCCACAagaugGCGAGCGcCGUCGcaguUCUGGCc- -3'
miRNA:   3'- aGGUGU-----UGUUCGU-GUAGU----AGACCGac -5'
14091 5' -50.2 NC_003521.1 + 20434 0.69 0.985273
Target:  5'- gCCugGGCA---GCGUCuUCUGGCUGg -3'
miRNA:   3'- aGGugUUGUucgUGUAGuAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 22714 0.67 0.997364
Target:  5'- aUCUACAGCGGGCucuacgcccuCAUCGUCaccGGCg- -3'
miRNA:   3'- -AGGUGUUGUUCGu---------GUAGUAGa--CCGac -5'
14091 5' -50.2 NC_003521.1 + 25072 0.66 0.998713
Target:  5'- uUCaGCGGCAA-CGCGUCGUCgGGCUc -3'
miRNA:   3'- -AGgUGUUGUUcGUGUAGUAGaCCGAc -5'
14091 5' -50.2 NC_003521.1 + 25647 0.69 0.983419
Target:  5'- aCCACGACAucaggcGGCAgAUCGUgCUGGUc- -3'
miRNA:   3'- aGGUGUUGU------UCGUgUAGUA-GACCGac -5'
14091 5' -50.2 NC_003521.1 + 26186 0.68 0.991151
Target:  5'- gCCAUcACGgugcucuucAGCACGcUgGUCUGGCUGg -3'
miRNA:   3'- aGGUGuUGU---------UCGUGU-AgUAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 26949 0.66 0.998139
Target:  5'- cUCCGCGcccgGCGGGUACGUCAg-UGGUa- -3'
miRNA:   3'- -AGGUGU----UGUUCGUGUAGUagACCGac -5'
14091 5' -50.2 NC_003521.1 + 27089 0.73 0.907931
Target:  5'- aCCACGGCcuucugcGGCGC--CGUCUGGCUGg -3'
miRNA:   3'- aGGUGUUGu------UCGUGuaGUAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 27225 0.67 0.996885
Target:  5'- aCCcCAACAGcCugGUCAUCgccGGCUGc -3'
miRNA:   3'- aGGuGUUGUUcGugUAGUAGa--CCGAC- -5'
14091 5' -50.2 NC_003521.1 + 29555 0.69 0.989894
Target:  5'- aCCACGAUAGGC-CGuggcUCAUCUGGg-- -3'
miRNA:   3'- aGGUGUUGUUCGuGU----AGUAGACCgac -5'
14091 5' -50.2 NC_003521.1 + 32088 0.7 0.97421
Target:  5'- gCCACGGCcAGCGCcaugCGUUUGGCg- -3'
miRNA:   3'- aGGUGUUGuUCGUGua--GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 32383 0.66 0.998139
Target:  5'- aUCUACGGCGGuaACAUgaccggCAUCUGGCa- -3'
miRNA:   3'- -AGGUGUUGUUcgUGUA------GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 36995 0.7 0.971418
Target:  5'- aUCCGCGACGAGgGCGUCG-C-GGCg- -3'
miRNA:   3'- -AGGUGUUGUUCgUGUAGUaGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 39907 0.67 0.997779
Target:  5'- gUCC-CGGCGGGCGCGaaagCG-CUGGCUc -3'
miRNA:   3'- -AGGuGUUGUUCGUGUa---GUaGACCGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.