miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 5' -50.2 NC_003521.1 + 176665 0.66 0.998448
Target:  5'- cUCCAgCAGCGAGUAC-UCGUUgacGGCg- -3'
miRNA:   3'- -AGGU-GUUGUUCGUGuAGUAGa--CCGac -5'
14091 5' -50.2 NC_003521.1 + 214696 0.66 0.998448
Target:  5'- aCCACGACGuugcguugcAGCcagaagaccGCGUCGUCUGuCUGg -3'
miRNA:   3'- aGGUGUUGU---------UCG---------UGUAGUAGACcGAC- -5'
14091 5' -50.2 NC_003521.1 + 234155 0.66 0.998713
Target:  5'- cCUGCAGCAcgAGCgggACAUguUCUGGCa- -3'
miRNA:   3'- aGGUGUUGU--UCG---UGUAguAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 226113 0.66 0.999129
Target:  5'- aCCACGGCGuGCACAgg--UUGGCg- -3'
miRNA:   3'- aGGUGUUGUuCGUGUaguaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 165275 0.66 0.998713
Target:  5'- aCCACGGuCucGCucuCGUCucUCUGGCUGu -3'
miRNA:   3'- aGGUGUU-GuuCGu--GUAGu-AGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 172179 0.66 0.998938
Target:  5'- uUCUGCAucagggGCAGGCACAUguUCagGGCg- -3'
miRNA:   3'- -AGGUGU------UGUUCGUGUAguAGa-CCGac -5'
14091 5' -50.2 NC_003521.1 + 154951 0.66 0.998938
Target:  5'- cUCUACcGCGAGCgccuggugcccuGCAUCAUCUgcgugGGCUc -3'
miRNA:   3'- -AGGUGuUGUUCG------------UGUAGUAGA-----CCGAc -5'
14091 5' -50.2 NC_003521.1 + 146111 0.66 0.999129
Target:  5'- uUCCGCGACcuGCccacCGUCuAUCUGGUg- -3'
miRNA:   3'- -AGGUGUUGuuCGu---GUAG-UAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 2713 0.66 0.999129
Target:  5'- gCCACucguGCGggAGCGcCGUCAccgccucgCUGGCUGg -3'
miRNA:   3'- aGGUGu---UGU--UCGU-GUAGUa-------GACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 222865 0.66 0.998448
Target:  5'- aCCACAGCAGGC-CGU--UCuUGGCg- -3'
miRNA:   3'- aGGUGUUGUUCGuGUAguAG-ACCGac -5'
14091 5' -50.2 NC_003521.1 + 200144 0.66 0.998448
Target:  5'- uUCCACAGCAcGCcgcccACAUCGUUUGcccuccuuacccGCUGu -3'
miRNA:   3'- -AGGUGUUGUuCG-----UGUAGUAGAC------------CGAC- -5'
14091 5' -50.2 NC_003521.1 + 114530 0.66 0.998139
Target:  5'- gCCGCcACGGGCAcCAUCGauuuccgCUGGCg- -3'
miRNA:   3'- aGGUGuUGUUCGU-GUAGUa------GACCGac -5'
14091 5' -50.2 NC_003521.1 + 74461 0.66 0.998713
Target:  5'- aCCGuguuCAGCGAGCACGUCcug-GGCUu -3'
miRNA:   3'- aGGU----GUUGUUCGUGUAGuagaCCGAc -5'
14091 5' -50.2 NC_003521.1 + 32383 0.66 0.998139
Target:  5'- aUCUACGGCGGuaACAUgaccggCAUCUGGCa- -3'
miRNA:   3'- -AGGUGUUGUUcgUGUA------GUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 240466 0.66 0.998448
Target:  5'- uUCCACAGCAcGCcgcccACAUCGUUUGcccuccuuacccGCUGu -3'
miRNA:   3'- -AGGUGUUGUuCG-----UGUAGUAGAC------------CGAC- -5'
14091 5' -50.2 NC_003521.1 + 177679 0.66 0.998139
Target:  5'- aUCguCAGCccGCGCAgcugcugcucCAUCUGGCUGa -3'
miRNA:   3'- -AGguGUUGuuCGUGUa---------GUAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 192981 0.66 0.998448
Target:  5'- gCCACGGCGGGCACGcUCGUCa----- -3'
miRNA:   3'- aGGUGUUGUUCGUGU-AGUAGaccgac -5'
14091 5' -50.2 NC_003521.1 + 190292 0.66 0.998139
Target:  5'- aUCCACGugucuUggGCGCGUCAugUCcGGCg- -3'
miRNA:   3'- -AGGUGUu----GuuCGUGUAGU--AGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 169469 0.66 0.998448
Target:  5'- uUCguCGcCAGGCGCGUCGUCguUGGCc- -3'
miRNA:   3'- -AGguGUuGUUCGUGUAGUAG--ACCGac -5'
14091 5' -50.2 NC_003521.1 + 26949 0.66 0.998139
Target:  5'- cUCCGCGcccgGCGGGUACGUCAg-UGGUa- -3'
miRNA:   3'- -AGGUGU----UGUUCGUGUAGUagACCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.