miRNA display CGI


Results 41 - 60 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 5' -56.9 NC_003521.1 + 37175 0.72 0.694748
Target:  5'- cGACCacaagucucGCGACCUGCagUUCAGCcguaaCCCg -3'
miRNA:   3'- uCUGG---------UGCUGGACGagAAGUCGc----GGG- -5'
14096 5' -56.9 NC_003521.1 + 175264 0.71 0.70445
Target:  5'- cGugCguaGuCCUGCUCguagUCGGUGCCCg -3'
miRNA:   3'- uCugGug-CuGGACGAGa---AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 207781 0.71 0.70445
Target:  5'- cGGcauCCACGugCUGCUCUauggcaCGGCGCUg -3'
miRNA:   3'- -UCu--GGUGCugGACGAGAa-----GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 166695 0.71 0.714095
Target:  5'- -cGCCACGucguCCUGCa---CGGCGCCCa -3'
miRNA:   3'- ucUGGUGCu---GGACGagaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 155169 0.71 0.714095
Target:  5'- cGACUucgGCGACCUGCUCaaguacauggagUUCGGCauCCCg -3'
miRNA:   3'- uCUGG---UGCUGGACGAG------------AAGUCGc-GGG- -5'
14096 5' -56.9 NC_003521.1 + 119681 0.71 0.714095
Target:  5'- cGACCGCGACaUGCUCaugcugcgCGGCcCCCa -3'
miRNA:   3'- uCUGGUGCUGgACGAGaa------GUCGcGGG- -5'
14096 5' -56.9 NC_003521.1 + 29257 0.71 0.723675
Target:  5'- cGGCgACGACCagccGCUCUUCaugaguacgggGGCGCUCu -3'
miRNA:   3'- uCUGgUGCUGGa---CGAGAAG-----------UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 205909 0.71 0.733181
Target:  5'- -cGCCGCuACCUGCUgcgCUUCgagGGCGCCUg -3'
miRNA:   3'- ucUGGUGcUGGACGA---GAAG---UCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 202583 0.71 0.739788
Target:  5'- gAGAUCAcCGGCUcaaUGCUCUccucggccccuacaUCGGCGCCa -3'
miRNA:   3'- -UCUGGU-GCUGG---ACGAGA--------------AGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 214499 0.71 0.742606
Target:  5'- aAGACCAgGGCguugcugggaUGCUUguagUCGGUGCCCu -3'
miRNA:   3'- -UCUGGUgCUGg---------ACGAGa---AGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 148580 0.71 0.742606
Target:  5'- cGGCCAaaaGACC-GCg---CGGCGCCCg -3'
miRNA:   3'- uCUGGUg--CUGGaCGagaaGUCGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 142643 0.71 0.742606
Target:  5'- gAGaACCGCGGCCUcaGCggUCggcgCAGCGCCg -3'
miRNA:   3'- -UC-UGGUGCUGGA--CG--AGaa--GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 87134 0.71 0.742606
Target:  5'- --gUCGCGA-CUGCUCUUCAuGCGCaCCu -3'
miRNA:   3'- ucuGGUGCUgGACGAGAAGU-CGCG-GG- -5'
14096 5' -56.9 NC_003521.1 + 188078 0.71 0.742606
Target:  5'- cGAgUGCGGCCUGgUCUUCGGUGUacauCCg -3'
miRNA:   3'- uCUgGUGCUGGACgAGAAGUCGCG----GG- -5'
14096 5' -56.9 NC_003521.1 + 163710 0.71 0.751941
Target:  5'- cGGCCACGAggccgaauCCUGCgUCgggaugagCGGCGCCg -3'
miRNA:   3'- uCUGGUGCU--------GGACG-AGaa------GUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 138153 0.71 0.751941
Target:  5'- --cCCuuCGACCUGCUCaagCAcGUGCCCg -3'
miRNA:   3'- ucuGGu-GCUGGACGAGaa-GU-CGCGGG- -5'
14096 5' -56.9 NC_003521.1 + 122619 0.71 0.751941
Target:  5'- cGGCgGCGGCCgcgcGCUCggCGGC-CCCg -3'
miRNA:   3'- uCUGgUGCUGGa---CGAGaaGUCGcGGG- -5'
14096 5' -56.9 NC_003521.1 + 129022 0.7 0.760259
Target:  5'- cAGGCCGCGcuccauggcgucgGCCgUGUUCUUgAGCGCgCg -3'
miRNA:   3'- -UCUGGUGC-------------UGG-ACGAGAAgUCGCGgG- -5'
14096 5' -56.9 NC_003521.1 + 115410 0.7 0.761178
Target:  5'- -cGCCACGGCCUccGgaC-UCAGCGCCg -3'
miRNA:   3'- ucUGGUGCUGGA--CgaGaAGUCGCGGg -5'
14096 5' -56.9 NC_003521.1 + 15735 0.7 0.761178
Target:  5'- cGugUACGAUgUGC-CaUCGGCGCCUg -3'
miRNA:   3'- uCugGUGCUGgACGaGaAGUCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.