miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 129472 1.09 0.004403
Target:  5'- gCGCCGGGAUCCGAGGAGAAGGACAUGg -3'
miRNA:   3'- -GCGGCCCUAGGCUCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 139646 0.85 0.161279
Target:  5'- cCGCCGGGcgcggacgccGUCUGAGGAGAGGGACGc- -3'
miRNA:   3'- -GCGGCCC----------UAGGCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 98824 0.85 0.165262
Target:  5'- gGCCGGGAUCUGAGGugacggcgAGGAGGugAUGg -3'
miRNA:   3'- gCGGCCCUAGGCUCC--------UCUUCCugUAC- -5'
14101 3' -56.7 NC_003521.1 + 16815 0.78 0.376511
Target:  5'- cCGCCGGGcccgccgcugCCGcAGGAGGAGGACAa- -3'
miRNA:   3'- -GCGGCCCua--------GGC-UCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 119361 0.76 0.460459
Target:  5'- uCGCUGGGcUCCGAcgaGGAGGAGGACc-- -3'
miRNA:   3'- -GCGGCCCuAGGCU---CCUCUUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 90874 0.76 0.496715
Target:  5'- gGCCGaGGGggaCGGGGAGggGGACGa- -3'
miRNA:   3'- gCGGC-CCUag-GCUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 113365 0.74 0.562959
Target:  5'- gGCCGGGGg-CGAGGAGGAGGGu--- -3'
miRNA:   3'- gCGGCCCUagGCUCCUCUUCCUguac -5'
14101 3' -56.7 NC_003521.1 + 116965 0.74 0.611697
Target:  5'- aCGgCGGGAaaCGAGGAGAAGGAa--- -3'
miRNA:   3'- -GCgGCCCUagGCUCCUCUUCCUguac -5'
14101 3' -56.7 NC_003521.1 + 192422 0.74 0.611697
Target:  5'- uCGCCgagacucgaGGGAgaCGaAGGAGAGGGGCAUGg -3'
miRNA:   3'- -GCGG---------CCCUagGC-UCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 129884 0.73 0.67056
Target:  5'- gGCCGGG----GAGGAGGAGGACGa- -3'
miRNA:   3'- gCGGCCCuaggCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 64674 0.72 0.699702
Target:  5'- -aCCGGGcUCCGAGGAGAuGGAgAa- -3'
miRNA:   3'- gcGGCCCuAGGCUCCUCUuCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 102054 0.72 0.706441
Target:  5'- gGCCGGGuugagcacuacgguGUUgGcGGGGAAGGGCGUGa -3'
miRNA:   3'- gCGGCCC--------------UAGgCuCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 87355 0.72 0.709321
Target:  5'- aGCCGGagcCCGAGGAGGAGGcCGa- -3'
miRNA:   3'- gCGGCCcuaGGCUCCUCUUCCuGUac -5'
14101 3' -56.7 NC_003521.1 + 116991 0.72 0.709321
Target:  5'- aGCgGGGGaa-GAGGAGGAGGACGa- -3'
miRNA:   3'- gCGgCCCUaggCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 167108 0.72 0.717928
Target:  5'- aGCCGGGGaCUGAGGAGccucccuGGGGACu-- -3'
miRNA:   3'- gCGGCCCUaGGCUCCUC-------UUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 29974 0.72 0.718881
Target:  5'- aCGCCGGuGGUCUGGacGGAGGgagGGGACGa- -3'
miRNA:   3'- -GCGGCC-CUAGGCU--CCUCU---UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 48923 0.72 0.718881
Target:  5'- aGCCGGuGUCCGu---GAAGGACGUGg -3'
miRNA:   3'- gCGGCCcUAGGCuccuCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 164450 0.71 0.765488
Target:  5'- gCGCCGcGGGcCUGAGcauGAAGGGCGUGg -3'
miRNA:   3'- -GCGGC-CCUaGGCUCcu-CUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 7975 0.71 0.774515
Target:  5'- gGCCGGGAgggUCCGcggcggcggGGGAGGuaccGGGGCAg- -3'
miRNA:   3'- gCGGCCCU---AGGC---------UCCUCU----UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 4232 0.7 0.78871
Target:  5'- -cCCGGGAggaggaccgagaCGGGGAGGAGGACGa- -3'
miRNA:   3'- gcGGCCCUag----------GCUCCUCUUCCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.