miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 172252 0.67 0.910078
Target:  5'- uGCgGuaGUCCGAGGAGcGGGGGCAc- -3'
miRNA:   3'- gCGgCccUAGGCUCCUC-UUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 13 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 240562 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 71445 0.69 0.841859
Target:  5'- gGCgGGGAUCgCGGGG-GAA-GACAUGc -3'
miRNA:   3'- gCGgCCCUAG-GCUCCuCUUcCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 186535 0.68 0.871545
Target:  5'- aGCgGGGGcUCCGuGGGAGGcAGGGCcgGc -3'
miRNA:   3'- gCGgCCCU-AGGC-UCCUCU-UCCUGuaC- -5'
14101 3' -56.7 NC_003521.1 + 36145 0.68 0.871545
Target:  5'- uCGUCGacccugcCCGAGGAGGAGGACAc- -3'
miRNA:   3'- -GCGGCccua---GGCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 64409 0.68 0.889817
Target:  5'- aGCgCGGGcugaacaaacuauaCGAGGAGGAGGACGa- -3'
miRNA:   3'- gCG-GCCCuag-----------GCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 27686 0.68 0.891755
Target:  5'- gCGCgCGGaGAUCaCGAGGAGAgaaaccacAGGAgaGUGg -3'
miRNA:   3'- -GCG-GCC-CUAG-GCUCCUCU--------UCCUg-UAC- -5'
14101 3' -56.7 NC_003521.1 + 206150 0.68 0.897454
Target:  5'- gGCCGGGGaaaggccUCCGAgaagcccaGGAGcAGGGCGg- -3'
miRNA:   3'- gCGGCCCU-------AGGCU--------CCUCuUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 658 0.7 0.817732
Target:  5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3'
miRNA:   3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 175915 0.7 0.800859
Target:  5'- uGCUGGGGaccuggcCCGAGGAGccggagGAGGACAg- -3'
miRNA:   3'- gCGGCCCUa------GGCUCCUC------UUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 3404 0.7 0.792208
Target:  5'- aCGCCGGcAUCCGGGGAu-GGGGCc-- -3'
miRNA:   3'- -GCGGCCcUAGGCUCCUcuUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 113365 0.74 0.562959
Target:  5'- gGCCGGGGg-CGAGGAGGAGGGu--- -3'
miRNA:   3'- gCGGCCCUagGCUCCUCUUCCUguac -5'
14101 3' -56.7 NC_003521.1 + 192422 0.74 0.611697
Target:  5'- uCGCCgagacucgaGGGAgaCGaAGGAGAGGGGCAUGg -3'
miRNA:   3'- -GCGG---------CCCUagGC-UCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 129884 0.73 0.67056
Target:  5'- gGCCGGG----GAGGAGGAGGACGa- -3'
miRNA:   3'- gCGGCCCuaggCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 64674 0.72 0.699702
Target:  5'- -aCCGGGcUCCGAGGAGAuGGAgAa- -3'
miRNA:   3'- gcGGCCCuAGGCUCCUCUuCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 102054 0.72 0.706441
Target:  5'- gGCCGGGuugagcacuacgguGUUgGcGGGGAAGGGCGUGa -3'
miRNA:   3'- gCGGCCC--------------UAGgCuCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 87355 0.72 0.709321
Target:  5'- aGCCGGagcCCGAGGAGGAGGcCGa- -3'
miRNA:   3'- gCGGCCcuaGGCUCCUCUUCCuGUac -5'
14101 3' -56.7 NC_003521.1 + 167108 0.72 0.717928
Target:  5'- aGCCGGGGaCUGAGGAGccucccuGGGGACu-- -3'
miRNA:   3'- gCGGCCCUaGGCUCCUC-------UUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 4232 0.7 0.78871
Target:  5'- -cCCGGGAggaggaccgagaCGGGGAGGAGGACGa- -3'
miRNA:   3'- gcGGCCCUag----------GCUCCUCUUCCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.