miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 13 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 658 0.7 0.817732
Target:  5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3'
miRNA:   3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 3404 0.7 0.792208
Target:  5'- aCGCCGGcAUCCGGGGAu-GGGGCc-- -3'
miRNA:   3'- -GCGGCCcUAGGCUCCUcuUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 4232 0.7 0.78871
Target:  5'- -cCCGGGAggaggaccgagaCGGGGAGGAGGACGa- -3'
miRNA:   3'- gcGGCCCUag----------GCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 6821 0.67 0.92998
Target:  5'- aGCCgauccagaccaggaGGGcgCCGAGGAGGuuguagugGGaGGCGUGg -3'
miRNA:   3'- gCGG--------------CCCuaGGCUCCUCU--------UC-CUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 7975 0.71 0.774515
Target:  5'- gGCCGGGAgggUCCGcggcggcggGGGAGGuaccGGGGCAg- -3'
miRNA:   3'- gCGGCCCU---AGGC---------UCCUCU----UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 13894 0.69 0.833983
Target:  5'- uCGCCGGGGggcCCGGcgcGGAGggGGcCGc- -3'
miRNA:   3'- -GCGGCCCUa--GGCU---CCUCuuCCuGUac -5'
14101 3' -56.7 NC_003521.1 + 16815 0.78 0.376511
Target:  5'- cCGCCGGGcccgccgcugCCGcAGGAGGAGGACAa- -3'
miRNA:   3'- -GCGGCCCua--------GGC-UCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 19080 0.68 0.871545
Target:  5'- aGCUGGGccgugagGAGGAGggGGACGg- -3'
miRNA:   3'- gCGGCCCuagg---CUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 19440 0.66 0.945193
Target:  5'- gGaCCGGGAagaCGAaGAGGAGGACGa- -3'
miRNA:   3'- gC-GGCCCUag-GCUcCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 22160 0.7 0.817732
Target:  5'- -aCCGGGAgaCGGuGGAGAGGGACGa- -3'
miRNA:   3'- gcGGCCCUagGCU-CCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 27686 0.68 0.891755
Target:  5'- gCGCgCGGaGAUCaCGAGGAGAgaaaccacAGGAgaGUGg -3'
miRNA:   3'- -GCG-GCC-CUAG-GCUCCUCU--------UCCUg-UAC- -5'
14101 3' -56.7 NC_003521.1 + 29974 0.72 0.718881
Target:  5'- aCGCCGGuGGUCUGGacGGAGGgagGGGACGa- -3'
miRNA:   3'- -GCGGCC-CUAGGCU--CCUCU---UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 33604 0.68 0.891755
Target:  5'- cCGCaCGGGAggaGAGGAaccGGAGGACGa- -3'
miRNA:   3'- -GCG-GCCCUaggCUCCU---CUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 36145 0.68 0.871545
Target:  5'- uCGUCGacccugcCCGAGGAGGAGGACAc- -3'
miRNA:   3'- -GCGGCccua---GGCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 40335 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 40979 0.7 0.817732
Target:  5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3'
miRNA:   3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 48923 0.72 0.718881
Target:  5'- aGCCGGuGUCCGu---GAAGGACGUGg -3'
miRNA:   3'- gCGGCCcUAGGCuccuCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 53217 0.67 0.936258
Target:  5'- uCGCCGGGGagUCCGcGGGcGAAGcGACc-- -3'
miRNA:   3'- -GCGGCCCU--AGGCuCCU-CUUC-CUGuac -5'
14101 3' -56.7 NC_003521.1 + 58961 0.66 0.942604
Target:  5'- uCGCCGaGGGgucgugcguggcgaaUCagccgcuaGAGGAGggGGACGa- -3'
miRNA:   3'- -GCGGC-CCU---------------AGg-------CUCCUCuuCCUGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.