miRNA display CGI


Results 21 - 40 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 190524 0.81 0.241903
Target:  5'- uGGCUGaggaGCGAGGuGCGGCGGcagcAGCGGCGGa -3'
miRNA:   3'- -CCGGC----UGCUCC-UGCUGCU----UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 145875 0.81 0.24684
Target:  5'- cGGgCGGCGccGACGACGAggccgccGGCGGCGGg -3'
miRNA:   3'- -CCgGCUGCucCUGCUGCU-------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 169423 0.81 0.247393
Target:  5'- gGGCCGccgccucgcucACGcGGACGACGGcgucGGCGGCGGc -3'
miRNA:   3'- -CCGGC-----------UGCuCCUGCUGCU----UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 18094 0.81 0.252986
Target:  5'- cGGCCG-CGGGGACGGaggaGGuAGCGGUGGa -3'
miRNA:   3'- -CCGGCuGCUCCUGCUg---CU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 155250 0.8 0.258682
Target:  5'- uGGUgGugGGGGGCGGCGGcGGCGGCGc -3'
miRNA:   3'- -CCGgCugCUCCUGCUGCU-UCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 92008 0.8 0.264483
Target:  5'- gGGagCGGCGAGGcGCGGCGGcGGCGGCGGu -3'
miRNA:   3'- -CCg-GCUGCUCC-UGCUGCU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 35972 0.8 0.269794
Target:  5'- uGGgCGACGAGGACGACGAaccgggcuuggucAGCGaCGGc -3'
miRNA:   3'- -CCgGCUGCUCCUGCUGCU-------------UCGCcGCC- -5'
14111 5' -58.5 NC_003521.1 + 209551 0.8 0.270389
Target:  5'- cGcCCGGCGGGGugGCGGCGAcGGUGGCGGg -3'
miRNA:   3'- cC-GGCUGCUCC--UGCUGCU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 74553 0.8 0.2764
Target:  5'- uGGUgGACaaguaugucuGAGGGCGGCGAcggAGCGGCGGc -3'
miRNA:   3'- -CCGgCUG----------CUCCUGCUGCU---UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 91864 0.8 0.2764
Target:  5'- cGGCgGACcAGGACGGCG--GCGGCGGu -3'
miRNA:   3'- -CCGgCUGcUCCUGCUGCuuCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 44918 0.8 0.282518
Target:  5'- cGGCgaggacgaaGACGAGGACGACGAAGaGGaCGGg -3'
miRNA:   3'- -CCGg--------CUGCUCCUGCUGCUUCgCC-GCC- -5'
14111 5' -58.5 NC_003521.1 + 209080 0.79 0.295074
Target:  5'- uGCCGGuCGAGG-CGGCgGAGGCGGUGGc -3'
miRNA:   3'- cCGGCU-GCUCCuGCUG-CUUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 86267 0.79 0.295074
Target:  5'- cGGCCGGCGAGG-CGAaguugGggGUGGCGc -3'
miRNA:   3'- -CCGGCUGCUCCuGCUg----CuuCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 196713 0.79 0.30806
Target:  5'- cGGCCGACuucaccGGcGGCGACGGugguGGCGGCGGc -3'
miRNA:   3'- -CCGGCUGc-----UC-CUGCUGCU----UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 90873 0.79 0.314715
Target:  5'- cGGCCGAgGGGGACGGgGAGGgGGaCGa -3'
miRNA:   3'- -CCGGCUgCUCCUGCUgCUUCgCC-GCc -5'
14111 5' -58.5 NC_003521.1 + 42687 0.79 0.321479
Target:  5'- cGaaGACGAGGAgGACGAAGagGGCGGa -3'
miRNA:   3'- cCggCUGCUCCUgCUGCUUCg-CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 19045 0.78 0.32835
Target:  5'- cGCUGGagcuuCGAGGACGGCGgcGCGGCGc -3'
miRNA:   3'- cCGGCU-----GCUCCUGCUGCuuCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 195410 0.78 0.32835
Target:  5'- aGGCCGAgGAGGugGAggccacggccgaCGAAGaGGCGGc -3'
miRNA:   3'- -CCGGCUgCUCCugCU------------GCUUCgCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 37371 0.78 0.335329
Target:  5'- uGGUCGGCGAcuGCGGuguuCGAGGCGGCGGg -3'
miRNA:   3'- -CCGGCUGCUccUGCU----GCUUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 16889 0.78 0.342416
Target:  5'- cGGCCaucuggaggagGugGAGGACGAgGAGGCGGaCGa -3'
miRNA:   3'- -CCGG-----------CugCUCCUGCUgCUUCGCC-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.