miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 124598 1.11 0.002895
Target:  5'- uGGCCGACGAGGACGACGAAGCGGCGGc -3'
miRNA:   3'- -CCGGCUGCUCCUGCUGCUUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 87373 0.93 0.041982
Target:  5'- aGGCCGAgGuGGAgGACGAGGCGGCGGa -3'
miRNA:   3'- -CCGGCUgCuCCUgCUGCUUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 155383 0.92 0.047647
Target:  5'- cGCCGGCGcGGACGACGAGGCcGGCGGg -3'
miRNA:   3'- cCGGCUGCuCCUGCUGCUUCG-CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 13433 0.88 0.093584
Target:  5'- cGGUCGcCGAGGACGACGGacgucaagcgcAGCGGCGGu -3'
miRNA:   3'- -CCGGCuGCUCCUGCUGCU-----------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 98613 0.88 0.093584
Target:  5'- aGGCCauGGCGAGGAgGGCGAgAGCGGCGGc -3'
miRNA:   3'- -CCGG--CUGCUCCUgCUGCU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 135242 0.87 0.108438
Target:  5'- cGCCGGCGGcGGCGACGAcacGGCGGCGGa -3'
miRNA:   3'- cCGGCUGCUcCUGCUGCU---UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 7727 0.84 0.167207
Target:  5'- uGGgUGGgGAGGGCGGCGcGAGCGGCGGa -3'
miRNA:   3'- -CCgGCUgCUCCUGCUGC-UUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 204693 0.83 0.183679
Target:  5'- gGGUCGACGAGGGCaGCGAGGUgaccaccacGGCGGg -3'
miRNA:   3'- -CCGGCUGCUCCUGcUGCUUCG---------CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 31017 0.83 0.188015
Target:  5'- cGCCGGCGAGGACG-CGuucguGGUGGUGGg -3'
miRNA:   3'- cCGGCUGCUCCUGCuGCu----UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 164182 0.83 0.191995
Target:  5'- aGGCCGAgaguaggaGAGGAggcggaaCGGCGggGCGGCGGu -3'
miRNA:   3'- -CCGGCUg-------CUCCU-------GCUGCuuCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 10497 0.83 0.192442
Target:  5'- cGCCGGCGGGGAUGGCGuggccccccAGGCGGCGc -3'
miRNA:   3'- cCGGCUGCUCCUGCUGC---------UUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 86701 0.82 0.201568
Target:  5'- gGGCCGcgGCGGcGACGACGAGGCGGUGa -3'
miRNA:   3'- -CCGGC--UGCUcCUGCUGCUUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 100573 0.82 0.201568
Target:  5'- gGGCaCGAgGAGGACGACGAcGCGGaGGg -3'
miRNA:   3'- -CCG-GCUgCUCCUGCUGCUuCGCCgCC- -5'
14111 5' -58.5 NC_003521.1 + 75633 0.82 0.215962
Target:  5'- cGCCGACGAuGACGACGGcaacAGCGGCGc -3'
miRNA:   3'- cCGGCUGCUcCUGCUGCU----UCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 123560 0.82 0.215962
Target:  5'- cGGCCGACGAcGGCGgugGCGGgauGGCGGCGGc -3'
miRNA:   3'- -CCGGCUGCUcCUGC---UGCU---UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 129883 0.82 0.215962
Target:  5'- cGGCCGGgGAGGAggaggacgaCGACGggGCGGCc- -3'
miRNA:   3'- -CCGGCUgCUCCU---------GCUGCuuCGCCGcc -5'
14111 5' -58.5 NC_003521.1 + 113856 0.82 0.215962
Target:  5'- cGGCCGGCGAcGACGGCGcggguuccGCGGCGGc -3'
miRNA:   3'- -CCGGCUGCUcCUGCUGCuu------CGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 181761 0.81 0.226041
Target:  5'- cGGCCGACGAGGACaACGAgcuggAGaCGGCGc -3'
miRNA:   3'- -CCGGCUGCUCCUGcUGCU-----UC-GCCGCc -5'
14111 5' -58.5 NC_003521.1 + 191677 0.81 0.226041
Target:  5'- aGGUCGcCGAGGACGGCGAGGCGucuGCGu -3'
miRNA:   3'- -CCGGCuGCUCCUGCUGCUUCGC---CGCc -5'
14111 5' -58.5 NC_003521.1 + 172325 0.81 0.241903
Target:  5'- aGGCCGgucGCGGcGGACGGgugaGggGCGGCGGg -3'
miRNA:   3'- -CCGGC---UGCU-CCUGCUg---CuuCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.