miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 109635 0.65 0.940908
Target:  5'- cGCCGuaGCGGGcgaacaugaGACG-CGAgaugaugcagacguAGCGGCGGa -3'
miRNA:   3'- cCGGC--UGCUC---------CUGCuGCU--------------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 163466 0.66 0.918275
Target:  5'- cGCaUGACuGAGGAUGAUGAgaccGGgGGCGa -3'
miRNA:   3'- cCG-GCUG-CUCCUGCUGCU----UCgCCGCc -5'
14111 5' -58.5 NC_003521.1 + 197426 0.66 0.923474
Target:  5'- cGCCGAaagcgaaGAGGccAUGGCcAGGCGGCGc -3'
miRNA:   3'- cCGGCUg------CUCC--UGCUGcUUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 130861 0.66 0.923474
Target:  5'- cGGCgaggacgaUGACGAGGAUGAgGAguaucAGCGuCGGc -3'
miRNA:   3'- -CCG--------GCUGCUCCUGCUgCU-----UCGCcGCC- -5'
14111 5' -58.5 NC_003521.1 + 140143 0.66 0.928465
Target:  5'- aGGCCGugGA-GAUGcAgGAGGUggGGUGGu -3'
miRNA:   3'- -CCGGCugCUcCUGC-UgCUUCG--CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 207434 0.66 0.928465
Target:  5'- aGCCaGgGAGaGCGGCGGcuGGCGGCGu -3'
miRNA:   3'- cCGGcUgCUCcUGCUGCU--UCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 33209 0.66 0.927976
Target:  5'- aGGCCGGCGAGccgcccaGACGGaucuugcAGCcGGCGu -3'
miRNA:   3'- -CCGGCUGCUCcug----CUGCU-------UCG-CCGCc -5'
14111 5' -58.5 NC_003521.1 + 124090 0.66 0.918275
Target:  5'- gGGcCCGACGGcguGGGCGG-GAAGCaGCGc -3'
miRNA:   3'- -CC-GGCUGCU---CCUGCUgCUUCGcCGCc -5'
14111 5' -58.5 NC_003521.1 + 80557 0.66 0.916675
Target:  5'- aGGCCGcucAUGAGGuCGuCGAgucccuugagguagGGCGGCa- -3'
miRNA:   3'- -CCGGC---UGCUCCuGCuGCU--------------UCGCCGcc -5'
14111 5' -58.5 NC_003521.1 + 212561 0.66 0.928465
Target:  5'- cGGCC-AgGGGGAgGugGugaGAGCGGUGu -3'
miRNA:   3'- -CCGGcUgCUCCUgCugC---UUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 148432 0.66 0.918275
Target:  5'- cGGCCG-CGccGGCGGCuccaGggGUGGCcGGu -3'
miRNA:   3'- -CCGGCuGCucCUGCUG----CuuCGCCG-CC- -5'
14111 5' -58.5 NC_003521.1 + 79766 0.66 0.931836
Target:  5'- gGGCCGGUGAGGAcCGGCGuucaaguaagGAuugaaaaacaugccGCGGCGa -3'
miRNA:   3'- -CCGGCUGCUCCU-GCUGC----------UU--------------CGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 117933 0.66 0.928465
Target:  5'- cGCagGACGGGGGagGAgGAgagcaucaucgcGGCGGCGGc -3'
miRNA:   3'- cCGg-CUGCUCCUg-CUgCU------------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 88471 0.66 0.923474
Target:  5'- gGGCUGcaGCGAguugaagagGGugGGCGGguagAGCGGCa- -3'
miRNA:   3'- -CCGGC--UGCU---------CCugCUGCU----UCGCCGcc -5'
14111 5' -58.5 NC_003521.1 + 191953 0.66 0.928465
Target:  5'- cGUCGACGAacaaGACGACGAGGacaacgaGGCu- -3'
miRNA:   3'- cCGGCUGCUc---CUGCUGCUUCg------CCGcc -5'
14111 5' -58.5 NC_003521.1 + 214814 0.66 0.928465
Target:  5'- cGGgCGcCGGGcGCGGCGA--CGGCGGu -3'
miRNA:   3'- -CCgGCuGCUCcUGCUGCUucGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 78803 0.66 0.918275
Target:  5'- aGGUCGACGA--GCGGCccuGGUGGCGc -3'
miRNA:   3'- -CCGGCUGCUccUGCUGcu-UCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 54498 0.66 0.927484
Target:  5'- uGGCCGGCGGcccGGCGugGAccaggaucugcacGGCgccgcuggggcccGGCGGc -3'
miRNA:   3'- -CCGGCUGCUc--CUGCugCU-------------UCG-------------CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 27260 0.66 0.928465
Target:  5'- cGCCGAUGAugcGGcCcACGAAGgccaGGCGGg -3'
miRNA:   3'- cCGGCUGCU---CCuGcUGCUUCg---CCGCC- -5'
14111 5' -58.5 NC_003521.1 + 201311 0.66 0.925495
Target:  5'- cGCCGcGCGAccccuggaucgugcuGGugGccaccaucguccACGAGGCGGCGa -3'
miRNA:   3'- cCGGC-UGCU---------------CCugC------------UGCUUCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.