miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 87 0.71 0.730313
Target:  5'- gGGCCGGcCGGucGGACGuguuuCGGGcCGGCGGg -3'
miRNA:   3'- -CCGGCU-GCU--CCUGCu----GCUUcGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 93 0.75 0.487378
Target:  5'- cGCgGGCGugcaGGGAgGcCGAAGCGGCGGc -3'
miRNA:   3'- cCGgCUGC----UCCUgCuGCUUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 1083 0.66 0.925495
Target:  5'- cGCCGcGCGAccccuggaucgugcuGGugGccaccaucguccACGAGGCGGCGa -3'
miRNA:   3'- cCGGC-UGCU---------------CCugC------------UGCUUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 1294 0.67 0.906687
Target:  5'- cGCCGACGAaugguuccgcuacGGcgcCGGCGAcGUGGCGcGg -3'
miRNA:   3'- cCGGCUGCU-------------CCu--GCUGCUuCGCCGC-C- -5'
14111 5' -58.5 NC_003521.1 + 2801 0.66 0.923474
Target:  5'- gGGCCcuACGAcGcGAUGACGAAGacuGGCGa -3'
miRNA:   3'- -CCGGc-UGCU-C-CUGCUGCUUCg--CCGCc -5'
14111 5' -58.5 NC_003521.1 + 4241 0.71 0.711865
Target:  5'- aGGaCCGAgacgggGAGGAgGACGAgaaGGaCGGCGGa -3'
miRNA:   3'- -CC-GGCUg-----CUCCUgCUGCU---UC-GCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 4278 0.68 0.839667
Target:  5'- aGCCGACGAGcGACGccgaACGAcgacaaggcagagGGaCGGcCGGg -3'
miRNA:   3'- cCGGCUGCUC-CUGC----UGCU-------------UC-GCC-GCC- -5'
14111 5' -58.5 NC_003521.1 + 4466 0.68 0.855264
Target:  5'- cGGCUGACGGucuGGGCGGCGAuccAGCaGaGCa- -3'
miRNA:   3'- -CCGGCUGCU---CCUGCUGCU---UCG-C-CGcc -5'
14111 5' -58.5 NC_003521.1 + 5410 0.68 0.869401
Target:  5'- gGGCCucgccCGAGGACGagGCGGAGgaauCGGCGu -3'
miRNA:   3'- -CCGGcu---GCUCCUGC--UGCUUC----GCCGCc -5'
14111 5' -58.5 NC_003521.1 + 6025 0.7 0.754741
Target:  5'- aGGCCGAgGAGccCGACGAguaagccgugccccAGCGGCc- -3'
miRNA:   3'- -CCGGCUgCUCcuGCUGCU--------------UCGCCGcc -5'
14111 5' -58.5 NC_003521.1 + 6063 0.78 0.349611
Target:  5'- gGGUCGACGaAGGgaauGCGACGGccgguGCGGCGGc -3'
miRNA:   3'- -CCGGCUGC-UCC----UGCUGCUu----CGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 6370 0.74 0.560491
Target:  5'- gGGCCGGuCGGGGuCG-CGGAGgGGCGc -3'
miRNA:   3'- -CCGGCU-GCUCCuGCuGCUUCgCCGCc -5'
14111 5' -58.5 NC_003521.1 + 6548 0.75 0.496289
Target:  5'- cGCCccagGGC-AGGGCGACGAGGUGGCGc -3'
miRNA:   3'- cCGG----CUGcUCCUGCUGCUUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 7583 0.67 0.903795
Target:  5'- cGG-UGACGAGuGACGuagcAUGAcgcaagcuguacgguGGCGGCGGa -3'
miRNA:   3'- -CCgGCUGCUC-CUGC----UGCU---------------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 7727 0.84 0.167207
Target:  5'- uGGgUGGgGAGGGCGGCGcGAGCGGCGGa -3'
miRNA:   3'- -CCgGCUgCUCCUGCUGC-UUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 7829 0.71 0.711865
Target:  5'- aGGCCauccGGCGccagaaGACGAgGggGUGGCGGa -3'
miRNA:   3'- -CCGG----CUGCuc----CUGCUgCuuCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 7974 0.71 0.702548
Target:  5'- cGGCCGG-GAGGGuc-CGcGGCGGCGGg -3'
miRNA:   3'- -CCGGCUgCUCCUgcuGCuUCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 10497 0.83 0.192442
Target:  5'- cGCCGGCGGGGAUGGCGuggccccccAGGCGGCGc -3'
miRNA:   3'- cCGGCUGCUCCUGCUGC---------UUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 12546 0.71 0.730313
Target:  5'- cGCCGugGAGGACGcCG-AGCGucUGGa -3'
miRNA:   3'- cCGGCugCUCCUGCuGCuUCGCc-GCC- -5'
14111 5' -58.5 NC_003521.1 + 13014 0.71 0.693181
Target:  5'- -uCgGACGAGGACGAgaaaccCGAGGCGGagaaCGGg -3'
miRNA:   3'- ccGgCUGCUCCUGCU------GCUUCGCC----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.