miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14111 5' -58.5 NC_003521.1 + 6063 0.78 0.349611
Target:  5'- gGGUCGACGaAGGgaauGCGACGGccgguGCGGCGGc -3'
miRNA:   3'- -CCGGCUGC-UCC----UGCUGCUu----CGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 91864 0.8 0.2764
Target:  5'- cGGCgGACcAGGACGGCG--GCGGCGGu -3'
miRNA:   3'- -CCGgCUGcUCCUGCUGCuuCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 44918 0.8 0.282518
Target:  5'- cGGCgaggacgaaGACGAGGACGACGAAGaGGaCGGg -3'
miRNA:   3'- -CCGg--------CUGCUCCUGCUGCUUCgCC-GCC- -5'
14111 5' -58.5 NC_003521.1 + 86267 0.79 0.295074
Target:  5'- cGGCCGGCGAGG-CGAaguugGggGUGGCGc -3'
miRNA:   3'- -CCGGCUGCUCCuGCUg----CuuCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 196713 0.79 0.30806
Target:  5'- cGGCCGACuucaccGGcGGCGACGGugguGGCGGCGGc -3'
miRNA:   3'- -CCGGCUGc-----UC-CUGCUGCU----UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 19045 0.78 0.32835
Target:  5'- cGCUGGagcuuCGAGGACGGCGgcGCGGCGc -3'
miRNA:   3'- cCGGCU-----GCUCCUGCUGCuuCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 29391 0.78 0.348886
Target:  5'- aGGCCGAgGAGGACGACGAcgaggacaguccgGGCcccGGUGa -3'
miRNA:   3'- -CCGGCUgCUCCUGCUGCU-------------UCG---CCGCc -5'
14111 5' -58.5 NC_003521.1 + 63861 0.78 0.349611
Target:  5'- aGGCCcuGACacGGugGACGAGGCGGCGc -3'
miRNA:   3'- -CCGG--CUGcuCCugCUGCUUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 218704 0.78 0.349611
Target:  5'- aGGCgGAgGA-GACGGCGGcGGCGGCGGg -3'
miRNA:   3'- -CCGgCUgCUcCUGCUGCU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 74553 0.8 0.2764
Target:  5'- uGGUgGACaaguaugucuGAGGGCGGCGAcggAGCGGCGGc -3'
miRNA:   3'- -CCGgCUG----------CUCCUGCUGCU---UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 209551 0.8 0.270389
Target:  5'- cGcCCGGCGGGGugGCGGCGAcGGUGGCGGg -3'
miRNA:   3'- cC-GGCUGCUCC--UGCUGCU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 35972 0.8 0.269794
Target:  5'- uGGgCGACGAGGACGACGAaccgggcuuggucAGCGaCGGc -3'
miRNA:   3'- -CCgGCUGCUCCUGCUGCU-------------UCGCcGCC- -5'
14111 5' -58.5 NC_003521.1 + 31017 0.83 0.188015
Target:  5'- cGCCGGCGAGGACG-CGuucguGGUGGUGGg -3'
miRNA:   3'- cCGGCUGCUCCUGCuGCu----UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 10497 0.83 0.192442
Target:  5'- cGCCGGCGGGGAUGGCGuggccccccAGGCGGCGc -3'
miRNA:   3'- cCGGCUGCUCCUGCUGC---------UUCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 75633 0.82 0.215962
Target:  5'- cGCCGACGAuGACGACGGcaacAGCGGCGc -3'
miRNA:   3'- cCGGCUGCUcCUGCUGCU----UCGCCGCc -5'
14111 5' -58.5 NC_003521.1 + 129883 0.82 0.215962
Target:  5'- cGGCCGGgGAGGAggaggacgaCGACGggGCGGCc- -3'
miRNA:   3'- -CCGGCUgCUCCU---------GCUGCuuCGCCGcc -5'
14111 5' -58.5 NC_003521.1 + 191677 0.81 0.226041
Target:  5'- aGGUCGcCGAGGACGGCGAGGCGucuGCGu -3'
miRNA:   3'- -CCGGCuGCUCCUGCUGCUUCGC---CGCc -5'
14111 5' -58.5 NC_003521.1 + 145875 0.81 0.24684
Target:  5'- cGGgCGGCGccGACGACGAggccgccGGCGGCGGg -3'
miRNA:   3'- -CCgGCUGCucCUGCUGCU-------UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 18094 0.81 0.252986
Target:  5'- cGGCCG-CGGGGACGGaggaGGuAGCGGUGGa -3'
miRNA:   3'- -CCGGCuGCUCCUGCUg---CU-UCGCCGCC- -5'
14111 5' -58.5 NC_003521.1 + 92008 0.8 0.264483
Target:  5'- gGGagCGGCGAGGcGCGGCGGcGGCGGCGGu -3'
miRNA:   3'- -CCg-GCUGCUCC-UGCUGCU-UCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.