miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1412 5' -58.7 NC_001335.1 + 46356 1.12 0.00029
Target:  5'- gCUAUGCCCACGGUCAGCGCGACGGCCg -3'
miRNA:   3'- -GAUACGGGUGCCAGUCGCGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 49731 0.82 0.049833
Target:  5'- uUGUGCCCguuGCGGUCuGUGCGucaACGGCCg -3'
miRNA:   3'- gAUACGGG---UGCCAGuCGCGC---UGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 47371 0.75 0.15585
Target:  5'- ---cGCUacaGCGGUCGGaGCGAUGGCCu -3'
miRNA:   3'- gauaCGGg--UGCCAGUCgCGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 34269 0.73 0.197802
Target:  5'- gUGUGCgC-CGGUCGGCGCGGauGUCg -3'
miRNA:   3'- gAUACGgGuGCCAGUCGCGCUgcCGG- -5'
1412 5' -58.7 NC_001335.1 + 50285 0.73 0.199878
Target:  5'- --cUGCCCucCGGUCaaGGCuucuccugcccggacGCGACGGCCu -3'
miRNA:   3'- gauACGGGu-GCCAG--UCG---------------CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 39804 0.71 0.275496
Target:  5'- ---cGUCCACGG-CGGCGCucGCGGCg -3'
miRNA:   3'- gauaCGGGUGCCaGUCGCGc-UGCCGg -5'
1412 5' -58.7 NC_001335.1 + 21986 0.71 0.285182
Target:  5'- ---cGCCCccaccgaucucgaauGCGccGUCAGCGcCGAUGGCCu -3'
miRNA:   3'- gauaCGGG---------------UGC--CAGUCGC-GCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 23105 0.7 0.311318
Target:  5'- ---gGCCaCAUGGUCGGa-CGACGGCg -3'
miRNA:   3'- gauaCGG-GUGCCAGUCgcGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 46433 0.7 0.326607
Target:  5'- ---gGCCUuguucuccucgGCGGUCAgGCGUuccuuGACGGCCu -3'
miRNA:   3'- gauaCGGG-----------UGCCAGU-CGCG-----CUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 25892 0.7 0.326607
Target:  5'- -gGUGCCCuuGGU-GGU-CGACGGCCu -3'
miRNA:   3'- gaUACGGGugCCAgUCGcGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 32583 0.7 0.334458
Target:  5'- --cUGCCUGCGG--GGCGCGAgacugcugcUGGCCa -3'
miRNA:   3'- gauACGGGUGCCagUCGCGCU---------GCCGG- -5'
1412 5' -58.7 NC_001335.1 + 49000 0.69 0.342447
Target:  5'- --uUGCCguCGGcCAGCGUuguGACGaGCCg -3'
miRNA:   3'- gauACGGguGCCaGUCGCG---CUGC-CGG- -5'
1412 5' -58.7 NC_001335.1 + 34854 0.69 0.350571
Target:  5'- --cUGCCgGCaGGUCGGCaucUGugGGCCu -3'
miRNA:   3'- gauACGGgUG-CCAGUCGc--GCugCCGG- -5'
1412 5' -58.7 NC_001335.1 + 32927 0.69 0.358832
Target:  5'- ---cGCCguCGGcgaCGGUGaCGACGGCCu -3'
miRNA:   3'- gauaCGGguGCCa--GUCGC-GCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 9040 0.69 0.375759
Target:  5'- ---aGCCCACucaccGUCAGCGCGGaaccaGCCg -3'
miRNA:   3'- gauaCGGGUGc----CAGUCGCGCUgc---CGG- -5'
1412 5' -58.7 NC_001335.1 + 36454 0.68 0.390564
Target:  5'- -gAUGCCCugGCGGUgGGUGUguccgaugaucaccGACGuGCCg -3'
miRNA:   3'- gaUACGGG--UGCCAgUCGCG--------------CUGC-CGG- -5'
1412 5' -58.7 NC_001335.1 + 45534 0.68 0.393216
Target:  5'- ---cGUCCucguacucgACGGUCAGCGaccaGACGGUg -3'
miRNA:   3'- gauaCGGG---------UGCCAGUCGCg---CUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 22968 0.68 0.40214
Target:  5'- -gAUGCCgACGGUCGGaGCGuugucguugacGCGGaCCc -3'
miRNA:   3'- gaUACGGgUGCCAGUCgCGC-----------UGCC-GG- -5'
1412 5' -58.7 NC_001335.1 + 15144 0.68 0.411192
Target:  5'- ---gGCCCagcuucagcaGCGGcuUCAGCuCGACGGUCa -3'
miRNA:   3'- gauaCGGG----------UGCC--AGUCGcGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 46759 0.68 0.411192
Target:  5'- ---aGCCUcacggGCGGUCAGCGgaucuacgucuaCGGCGuGCCc -3'
miRNA:   3'- gauaCGGG-----UGCCAGUCGC------------GCUGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.