miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1412 5' -58.7 NC_001335.1 + 1148 0.66 0.549514
Target:  5'- ---aGCCCcCGGaucgggCGGCGUaGGCGGCg -3'
miRNA:   3'- gauaCGGGuGCCa-----GUCGCG-CUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 1377 0.66 0.539047
Target:  5'- ---cGCCCACcgaugagaAGCGCGA-GGCCa -3'
miRNA:   3'- gauaCGGGUGccag----UCGCGCUgCCGG- -5'
1412 5' -58.7 NC_001335.1 + 5567 0.66 0.497929
Target:  5'- -gAUGCCCAgCaGUgcCGGgGCGGCGGUg -3'
miRNA:   3'- gaUACGGGU-GcCA--GUCgCGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 7862 0.68 0.429669
Target:  5'- aCUGga-CCGCGcucGUCGGCugccgugucaGCGACGGCCu -3'
miRNA:   3'- -GAUacgGGUGC---CAGUCG----------CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 9040 0.69 0.375759
Target:  5'- ---aGCCCACucaccGUCAGCGCGGaaccaGCCg -3'
miRNA:   3'- gauaCGGGUGc----CAGUCGCGCUgc---CGG- -5'
1412 5' -58.7 NC_001335.1 + 9086 0.66 0.497929
Target:  5'- ---cGCCCGagcuuCGGUCGaugaccGaCGCGGCGGCg -3'
miRNA:   3'- gauaCGGGU-----GCCAGU------C-GCGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 13326 0.66 0.527614
Target:  5'- -cGUGCCgACguaccagacuGGUUGGCuaccuggaaccguGCGAUGGCCg -3'
miRNA:   3'- gaUACGGgUG----------CCAGUCG-------------CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 13693 0.67 0.448624
Target:  5'- ---cGCCCaACGcGUUGGCGCuugaguuCGGCCa -3'
miRNA:   3'- gauaCGGG-UGC-CAGUCGCGcu-----GCCGG- -5'
1412 5' -58.7 NC_001335.1 + 14392 0.66 0.549514
Target:  5'- -gGUGCUacCGGUUGGacgaGCGuCGGCCa -3'
miRNA:   3'- gaUACGGguGCCAGUCg---CGCuGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 15144 0.68 0.411192
Target:  5'- ---gGCCCagcuucagcaGCGGcuUCAGCuCGACGGUCa -3'
miRNA:   3'- gauaCGGG----------UGCC--AGUCGcGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 17595 0.68 0.420369
Target:  5'- aUcgGCgggAUGGUCAGCGCaGCGGUCa -3'
miRNA:   3'- gAuaCGgg-UGCCAGUCGCGcUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 19368 0.68 0.429669
Target:  5'- ---aGCCC-CaG-CAGCGCGAccaCGGCCu -3'
miRNA:   3'- gauaCGGGuGcCaGUCGCGCU---GCCGG- -5'
1412 5' -58.7 NC_001335.1 + 20234 0.66 0.508085
Target:  5'- ---cGUCCgagggAUGGUCcaacuGGCcgGCGACGGCCa -3'
miRNA:   3'- gauaCGGG-----UGCCAG-----UCG--CGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 21986 0.71 0.285182
Target:  5'- ---cGCCCccaccgaucucgaauGCGccGUCAGCGcCGAUGGCCu -3'
miRNA:   3'- gauaCGGG---------------UGC--CAGUCGC-GCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 22968 0.68 0.40214
Target:  5'- -gAUGCCgACGGUCGGaGCGuugucguugacGCGGaCCc -3'
miRNA:   3'- gaUACGGgUGCCAGUCgCGC-----------UGCC-GG- -5'
1412 5' -58.7 NC_001335.1 + 23105 0.7 0.311318
Target:  5'- ---gGCCaCAUGGUCGGa-CGACGGCg -3'
miRNA:   3'- gauaCGG-GUGCCAGUCgcGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 24106 0.67 0.448624
Target:  5'- -gGUGCCCA-GGUCuccGCacagaGCGGCGGUg -3'
miRNA:   3'- gaUACGGGUgCCAGu--CG-----CGCUGCCGg -5'
1412 5' -58.7 NC_001335.1 + 25832 0.67 0.477899
Target:  5'- cCUGUcGUUCACGGcucUCAGCGagcuggcuGCGGCCa -3'
miRNA:   3'- -GAUA-CGGGUGCC---AGUCGCgc------UGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 25892 0.7 0.326607
Target:  5'- -gGUGCCCuuGGU-GGU-CGACGGCCu -3'
miRNA:   3'- gaUACGGGugCCAgUCGcGCUGCCGG- -5'
1412 5' -58.7 NC_001335.1 + 26025 0.66 0.518326
Target:  5'- cCUAccCCCACGGcaUCAuCGCGAUGGUg -3'
miRNA:   3'- -GAUacGGGUGCC--AGUcGCGCUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.