Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1412 | 5' | -58.7 | NC_001335.1 | + | 46433 | 0.7 | 0.326607 |
Target: 5'- ---gGCCUuguucuccucgGCGGUCAgGCGUuccuuGACGGCCu -3' miRNA: 3'- gauaCGGG-----------UGCCAGU-CGCG-----CUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 26025 | 0.66 | 0.518326 |
Target: 5'- cCUAccCCCACGGcaUCAuCGCGAUGGUg -3' miRNA: 3'- -GAUacGGGUGCC--AGUcGCGCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 1377 | 0.66 | 0.539047 |
Target: 5'- ---cGCCCACcgaugagaAGCGCGA-GGCCa -3' miRNA: 3'- gauaCGGGUGccag----UCGCGCUgCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 27147 | 0.66 | 0.549514 |
Target: 5'- ---cGCCCucacagGCGGacaggcUCAGgGUGGCGGCa -3' miRNA: 3'- gauaCGGG------UGCC------AGUCgCGCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 45534 | 0.68 | 0.393216 |
Target: 5'- ---cGUCCucguacucgACGGUCAGCGaccaGACGGUg -3' miRNA: 3'- gauaCGGG---------UGCCAGUCGCg---CUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 30300 | 0.68 | 0.420369 |
Target: 5'- -gAUGUCCAgccCGGuggucUCAGUGuCGACGGCg -3' miRNA: 3'- gaUACGGGU---GCC-----AGUCGC-GCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 7862 | 0.68 | 0.429669 |
Target: 5'- aCUGga-CCGCGcucGUCGGCugccgugucaGCGACGGCCu -3' miRNA: 3'- -GAUacgGGUGC---CAGUCG----------CGCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 24106 | 0.67 | 0.448624 |
Target: 5'- -gGUGCCCA-GGUCuccGCacagaGCGGCGGUg -3' miRNA: 3'- gaUACGGGUgCCAGu--CG-----CGCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 23105 | 0.7 | 0.311318 |
Target: 5'- ---gGCCaCAUGGUCGGa-CGACGGCg -3' miRNA: 3'- gauaCGG-GUGCCAGUCgcGCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 38816 | 0.66 | 0.518326 |
Target: 5'- ---gGCCgGCGGguUCAGCagguacuCGAUGGCCc -3' miRNA: 3'- gauaCGGgUGCC--AGUCGc------GCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 25832 | 0.67 | 0.477899 |
Target: 5'- cCUGUcGUUCACGGcucUCAGCGagcuggcuGCGGCCa -3' miRNA: 3'- -GAUA-CGGGUGCC---AGUCGCgc------UGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 13693 | 0.67 | 0.448624 |
Target: 5'- ---cGCCCaACGcGUUGGCGCuugaguuCGGCCa -3' miRNA: 3'- gauaCGGG-UGC-CAGUCGCGcu-----GCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 32583 | 0.7 | 0.334458 |
Target: 5'- --cUGCCUGCGG--GGCGCGAgacugcugcUGGCCa -3' miRNA: 3'- gauACGGGUGCCagUCGCGCU---------GCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 9086 | 0.66 | 0.497929 |
Target: 5'- ---cGCCCGagcuuCGGUCGaugaccGaCGCGGCGGCg -3' miRNA: 3'- gauaCGGGU-----GCCAGU------C-GCGCUGCCGg -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 49000 | 0.69 | 0.342447 |
Target: 5'- --uUGCCguCGGcCAGCGUuguGACGaGCCg -3' miRNA: 3'- gauACGGguGCCaGUCGCG---CUGC-CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 41917 | 0.67 | 0.448624 |
Target: 5'- --uUGCCCA-GGaUCAGC-CGuuuGCGGCCu -3' miRNA: 3'- gauACGGGUgCC-AGUCGcGC---UGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 20234 | 0.66 | 0.508085 |
Target: 5'- ---cGUCCgagggAUGGUCcaacuGGCcgGCGACGGCCa -3' miRNA: 3'- gauaCGGG-----UGCCAG-----UCG--CGCUGCCGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 47059 | 0.66 | 0.528649 |
Target: 5'- ---cGCUUGCGGUuaCGGUGCGGCuGcGCCg -3' miRNA: 3'- gauaCGGGUGCCA--GUCGCGCUG-C-CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 36454 | 0.68 | 0.390564 |
Target: 5'- -gAUGCCCugGCGGUgGGUGUguccgaugaucaccGACGuGCCg -3' miRNA: 3'- gaUACGGG--UGCCAgUCGCG--------------CUGC-CGG- -5' |
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1412 | 5' | -58.7 | NC_001335.1 | + | 17595 | 0.68 | 0.420369 |
Target: 5'- aUcgGCgggAUGGUCAGCGCaGCGGUCa -3' miRNA: 3'- gAuaCGgg-UGCCAGUCGCGcUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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