miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 5' -54.3 NC_003521.1 + 119750 1 0.020882
Target:  5'- cGUAUGCGGC-AGCUGGAGUACCAGCAc -3'
miRNA:   3'- -CAUACGCCGuUCGACCUCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 29125 0.77 0.468191
Target:  5'- ---gGCGGCAAGCUGGAGgcCCuGUg -3'
miRNA:   3'- cauaCGCCGUUCGACCUCauGGuCGu -5'
14120 5' -54.3 NC_003521.1 + 209742 0.77 0.506339
Target:  5'- ---aGCGGCAgccacggcAGCcGGAGUACCGGCu -3'
miRNA:   3'- cauaCGCCGU--------UCGaCCUCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 55919 0.76 0.555769
Target:  5'- ---gGCGGC-GGCaacgGGGGUGCCAGCGg -3'
miRNA:   3'- cauaCGCCGuUCGa---CCUCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 76080 0.76 0.565835
Target:  5'- aUGUGCGGCAGGUUGGAcUGgCGGUAc -3'
miRNA:   3'- cAUACGCCGUUCGACCUcAUgGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 165128 0.75 0.575949
Target:  5'- -gGUGCGGacggGGGCUGGAccgcgGUGCCGGCGu -3'
miRNA:   3'- caUACGCCg---UUCGACCU-----CAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 187046 0.75 0.616735
Target:  5'- -aGUGCGGCuaacGGGCgGGAaggGUGCCAGCGa -3'
miRNA:   3'- caUACGCCG----UUCGaCCU---CAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 137516 0.74 0.667913
Target:  5'- ---aGC-GCcuGCUGGAGUACCGGCGc -3'
miRNA:   3'- cauaCGcCGuuCGACCUCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 124165 0.73 0.68824
Target:  5'- ---aGCGGC-GGCUGGAGagcgagagGCCGGCGu -3'
miRNA:   3'- cauaCGCCGuUCGACCUCa-------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 14194 0.73 0.68824
Target:  5'- ---cGCGaGCAAGCUGGuGUGCUgcGGCGa -3'
miRNA:   3'- cauaCGC-CGUUCGACCuCAUGG--UCGU- -5'
14120 5' -54.3 NC_003521.1 + 178391 0.73 0.695314
Target:  5'- ---cGCGGCGGGCucagacgaggagauUGGGGUGCguGCAg -3'
miRNA:   3'- cauaCGCCGUUCG--------------ACCUCAUGguCGU- -5'
14120 5' -54.3 NC_003521.1 + 170082 0.73 0.718357
Target:  5'- ---cGCGGCGcgcugcAGCUGGAcgaaGUGCCGGUAc -3'
miRNA:   3'- cauaCGCCGU------UCGACCU----CAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 6213 0.73 0.72826
Target:  5'- cUGUGCGGCAugacGGCgguccgaaUGGAG-ACCGGCGc -3'
miRNA:   3'- cAUACGCCGU----UCG--------ACCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 71290 0.73 0.72826
Target:  5'- ---cGCGGCAcgGGCcccUGGGGcACCAGCAc -3'
miRNA:   3'- cauaCGCCGU--UCG---ACCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 212808 0.72 0.766947
Target:  5'- ---cGCGGCGuGCUGGAGgaggaCAGCGa -3'
miRNA:   3'- cauaCGCCGUuCGACCUCaug--GUCGU- -5'
14120 5' -54.3 NC_003521.1 + 88256 0.71 0.821196
Target:  5'- uUGUGCGGCGccAGCUugaccGAGUGCUGGCu -3'
miRNA:   3'- cAUACGCCGU--UCGAc----CUCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 168166 0.71 0.827156
Target:  5'- cGUAUGCGGCAuagucugcgugaugAGCUGcuGgcccGCCAGCAc -3'
miRNA:   3'- -CAUACGCCGU--------------UCGACcuCa---UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 240628 0.7 0.835518
Target:  5'- -cGUGCGGCGGGCcGGccGGUcggacguguuucggGCCGGCGg -3'
miRNA:   3'- caUACGCCGUUCGaCC--UCA--------------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 200307 0.7 0.835518
Target:  5'- -cGUGCGGCGGGCcGGccGGUcggacguguuucggGCCGGCGg -3'
miRNA:   3'- caUACGCCGUUCGaCC--UCA--------------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 79 0.7 0.835518
Target:  5'- -cGUGCGGCGGGCcGGccGGUcggacguguuucggGCCGGCGg -3'
miRNA:   3'- caUACGCCGUUCGaCC--UCA--------------UGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.