miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 5' -54.3 NC_003521.1 + 128917 0.66 0.965244
Target:  5'- -gAUGCGGUugaGGGcCUGGcGcGCCAGCGu -3'
miRNA:   3'- caUACGCCG---UUC-GACCuCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 110718 0.69 0.909717
Target:  5'- gGUAcGaCGGCAGGUcccgggUGGAG-ACCAGCGc -3'
miRNA:   3'- -CAUaC-GCCGUUCG------ACCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 46985 0.68 0.92679
Target:  5'- --cUGCGGUAcAGCaugaUGGAGUuCCAGUAa -3'
miRNA:   3'- cauACGCCGU-UCG----ACCUCAuGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 18669 0.68 0.92679
Target:  5'- cGUGUGUGGUGucucuGGuCUGGGGUuucgccaugGCCGGCGc -3'
miRNA:   3'- -CAUACGCCGU-----UC-GACCUCA---------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 214981 0.67 0.946206
Target:  5'- ---gGCGGC-GGCcaggGGGGUgcgaGCCAGCGg -3'
miRNA:   3'- cauaCGCCGuUCGa---CCUCA----UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 168558 0.67 0.949215
Target:  5'- ---cGCuGGCGGGCUGcGGGUAagguggcggcugacCCAGCGg -3'
miRNA:   3'- cauaCG-CCGUUCGAC-CUCAU--------------GGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 144107 0.67 0.954501
Target:  5'- -cAUGCGGCu-GCUGGAccGCC-GCGg -3'
miRNA:   3'- caUACGCCGuuCGACCUcaUGGuCGU- -5'
14120 5' -54.3 NC_003521.1 + 102359 0.67 0.959762
Target:  5'- ---gGCGGCAGgcGCUcuugaagaaguacacGGGGUGCCGGUc -3'
miRNA:   3'- cauaCGCCGUU--CGA---------------CCUCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 119338 0.67 0.961883
Target:  5'- ---cGCGGuCGGGCaGGGGU-CCGGCc -3'
miRNA:   3'- cauaCGCC-GUUCGaCCUCAuGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 52198 0.69 0.909111
Target:  5'- ---gGCGGCGAGCUcaucagacaguacGGGG-GCCGGUAg -3'
miRNA:   3'- cauaCGCCGUUCGA-------------CCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 101726 0.69 0.89715
Target:  5'- ---cGCGGCGggGGCgagaUGGGGaagGCCGGCAg -3'
miRNA:   3'- cauaCGCCGU--UCG----ACCUCa--UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 40172 0.7 0.869274
Target:  5'- ---aGCGGCGcGUUGGcGUGCCGGUc -3'
miRNA:   3'- cauaCGCCGUuCGACCuCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 76080 0.76 0.565835
Target:  5'- aUGUGCGGCAGGUUGGAcUGgCGGUAc -3'
miRNA:   3'- cAUACGCCGUUCGACCUcAUgGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 178391 0.73 0.695314
Target:  5'- ---cGCGGCGGGCucagacgaggagauUGGGGUGCguGCAg -3'
miRNA:   3'- cauaCGCCGUUCG--------------ACCUCAUGguCGU- -5'
14120 5' -54.3 NC_003521.1 + 6213 0.73 0.72826
Target:  5'- cUGUGCGGCAugacGGCgguccgaaUGGAG-ACCGGCGc -3'
miRNA:   3'- cAUACGCCGU----UCG--------ACCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 71290 0.73 0.72826
Target:  5'- ---cGCGGCAcgGGCcccUGGGGcACCAGCAc -3'
miRNA:   3'- cauaCGCCGU--UCG---ACCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 88256 0.71 0.821196
Target:  5'- uUGUGCGGCGccAGCUugaccGAGUGCUGGCu -3'
miRNA:   3'- cAUACGCCGU--UCGAc----CUCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 168166 0.71 0.827156
Target:  5'- cGUAUGCGGCAuagucugcgugaugAGCUGcuGgcccGCCAGCAc -3'
miRNA:   3'- -CAUACGCCGU--------------UCGACcuCa---UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 200307 0.7 0.835518
Target:  5'- -cGUGCGGCGGGCcGGccGGUcggacguguuucggGCCGGCGg -3'
miRNA:   3'- caUACGCCGUUCGaCC--UCA--------------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 112539 0.7 0.854035
Target:  5'- ---cGCGGCGAGCUGG----UCAGCAc -3'
miRNA:   3'- cauaCGCCGUUCGACCucauGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.