miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14120 5' -54.3 NC_003521.1 + 79 0.7 0.835518
Target:  5'- -cGUGCGGCGGGCcGGccGGUcggacguguuucggGCCGGCGg -3'
miRNA:   3'- caUACGCCGUUCGaCC--UCA--------------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 2238 0.66 0.976609
Target:  5'- -aGUGCuGGaCGAGCUGG-GUGCCgucuucGGCu -3'
miRNA:   3'- caUACG-CC-GUUCGACCuCAUGG------UCGu -5'
14120 5' -54.3 NC_003521.1 + 6213 0.73 0.72826
Target:  5'- cUGUGCGGCAugacGGCgguccgaaUGGAG-ACCGGCGc -3'
miRNA:   3'- cAUACGCCGU----UCG--------ACCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 7747 0.66 0.968391
Target:  5'- ---aGCGGCGgaGGCggcGGcAGUcCCAGCAg -3'
miRNA:   3'- cauaCGCCGU--UCGa--CC-UCAuGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 7988 0.66 0.971329
Target:  5'- ---cGCGGC-GGCgggGGAgGUACCggGGCAg -3'
miRNA:   3'- cauaCGCCGuUCGa--CCU-CAUGG--UCGU- -5'
14120 5' -54.3 NC_003521.1 + 14194 0.73 0.68824
Target:  5'- ---cGCGaGCAAGCUGGuGUGCUgcGGCGa -3'
miRNA:   3'- cauaCGC-CGUUCGACCuCAUGG--UCGU- -5'
14120 5' -54.3 NC_003521.1 + 16515 0.66 0.965244
Target:  5'- --cUGCGGCGcucggcucGGCUGGAGcgcaacggacccUGCguGCAc -3'
miRNA:   3'- cauACGCCGU--------UCGACCUC------------AUGguCGU- -5'
14120 5' -54.3 NC_003521.1 + 18669 0.68 0.92679
Target:  5'- cGUGUGUGGUGucucuGGuCUGGGGUuucgccaugGCCGGCGc -3'
miRNA:   3'- -CAUACGCCGU-----UC-GACCUCA---------UGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 18856 0.67 0.941709
Target:  5'- -aGUGCGGCGuggAGCUGucGUGUCAGCu -3'
miRNA:   3'- caUACGCCGU---UCGACcuCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 19124 0.68 0.936975
Target:  5'- ---gGUGGCGGGCcgccGGuGUACCAGUc -3'
miRNA:   3'- cauaCGCCGUUCGa---CCuCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 19563 0.67 0.958304
Target:  5'- cGUGUGCGGCuucugcuGGCUGGuGUuCCcucacaAGCu -3'
miRNA:   3'- -CAUACGCCGu------UCGACCuCAuGG------UCGu -5'
14120 5' -54.3 NC_003521.1 + 21938 0.67 0.954501
Target:  5'- ---gGCGGCcucGGGCUGGAGcaguggGCgAGCGc -3'
miRNA:   3'- cauaCGCCG---UUCGACCUCa-----UGgUCGU- -5'
14120 5' -54.3 NC_003521.1 + 23581 0.69 0.876576
Target:  5'- ---gGUGGUggGCgcgGGGGUGCUGGCc -3'
miRNA:   3'- cauaCGCCGuuCGa--CCUCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 29125 0.77 0.468191
Target:  5'- ---gGCGGCAAGCUGGAGgcCCuGUg -3'
miRNA:   3'- cauaCGCCGUUCGACCUCauGGuCGu -5'
14120 5' -54.3 NC_003521.1 + 33943 0.69 0.888484
Target:  5'- cUGUGCGGCGugcgcggcgagcAGCUGGAgcggaguucccgacGUugCGGCu -3'
miRNA:   3'- cAUACGCCGU------------UCGACCU--------------CAugGUCGu -5'
14120 5' -54.3 NC_003521.1 + 40172 0.7 0.869274
Target:  5'- ---aGCGGCGcGUUGGcGUGCCGGUc -3'
miRNA:   3'- cauaCGCCGUuCGACCuCAUGGUCGu -5'
14120 5' -54.3 NC_003521.1 + 44354 0.67 0.958304
Target:  5'- ---gGCGGaaCGGGCc-GAGUGCCAGCGg -3'
miRNA:   3'- cauaCGCC--GUUCGacCUCAUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 46985 0.68 0.92679
Target:  5'- --cUGCGGUAcAGCaugaUGGAGUuCCAGUAa -3'
miRNA:   3'- cauACGCCGU-UCG----ACCUCAuGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 52198 0.69 0.909111
Target:  5'- ---gGCGGCGAGCUcaucagacaguacGGGG-GCCGGUAg -3'
miRNA:   3'- cauaCGCCGUUCGA-------------CCUCaUGGUCGU- -5'
14120 5' -54.3 NC_003521.1 + 52679 0.68 0.921338
Target:  5'- ---aGCGGCAccggcAGCgucGGcGGUGCCAGCc -3'
miRNA:   3'- cauaCGCCGU-----UCGa--CC-UCAUGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.