miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 145864 0.66 0.677012
Target:  5'- gGGCcCG-GCGGCggGCGGCgCcgacgacgagGCCGCCg -3'
miRNA:   3'- -UCGuGCaCGCCGa-UGCCG-G----------CGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 34450 0.66 0.677012
Target:  5'- aGGCGC-UGCgGGCcugGgGGUCGUCGCCg -3'
miRNA:   3'- -UCGUGcACG-CCGa--UgCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 224602 0.66 0.695699
Target:  5'- cGCACucggccagGCGGCa--GGgCGCCGCCa -3'
miRNA:   3'- uCGUGca------CGCCGaugCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 80007 0.66 0.686375
Target:  5'- gGGCuuGgGCGGCUucugcuGCGGCUGCUGUUUc -3'
miRNA:   3'- -UCGugCaCGCCGA------UGCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 223091 0.66 0.694768
Target:  5'- cAGCgaACGUGCGuagaucuGCgggAUGGCgGCCGUCUc -3'
miRNA:   3'- -UCG--UGCACGC-------CGa--UGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 160773 0.66 0.677012
Target:  5'- cGCGCGUGCcGCcgGCGGCaCGCgGgCg -3'
miRNA:   3'- uCGUGCACGcCGa-UGCCG-GCGgCgGg -5'
14136 3' -63.3 NC_003521.1 + 145713 0.66 0.695699
Target:  5'- aGGcCACGcucaaGCGcGC-GCGGCCGCucaaggCGCCCg -3'
miRNA:   3'- -UC-GUGCa----CGC-CGaUGCCGGCG------GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 220194 0.66 0.690109
Target:  5'- cAGCGCGcgGCucuccgagcacaucuGGaagAUGGCCGCCGUCa -3'
miRNA:   3'- -UCGUGCa-CG---------------CCga-UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 73623 0.66 0.674197
Target:  5'- cGGCGCGccUGCcagcccaagcagaaGGCcuccgccGCGGCCGCCuccaagacGCCCg -3'
miRNA:   3'- -UCGUGC--ACG--------------CCGa------UGCCGGCGG--------CGGG- -5'
14136 3' -63.3 NC_003521.1 + 168421 0.66 0.695699
Target:  5'- uAGgGCGgGCGGC-AgGGCCGCgGCg- -3'
miRNA:   3'- -UCgUGCaCGCCGaUgCCGGCGgCGgg -5'
14136 3' -63.3 NC_003521.1 + 69208 0.66 0.686375
Target:  5'- --gACGUcgGCGGC-ACucccGCCGCCGCUCg -3'
miRNA:   3'- ucgUGCA--CGCCGaUGc---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 207037 0.66 0.677012
Target:  5'- cAGCAguCG-GUGGCUG-GGCCGCagGCCg -3'
miRNA:   3'- -UCGU--GCaCGCCGAUgCCGGCGg-CGGg -5'
14136 3' -63.3 NC_003521.1 + 88250 0.66 0.699417
Target:  5'- uAGCGCuuGUGCGGCgccagcuugaccgagUGCuGGCUGUCGUgCa -3'
miRNA:   3'- -UCGUG--CACGCCG---------------AUG-CCGGCGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 224089 0.66 0.695699
Target:  5'- gGGCGCGcGCGccgGCGGUCGCCGaaCUCg -3'
miRNA:   3'- -UCGUGCaCGCcgaUGCCGGCGGC--GGG- -5'
14136 3' -63.3 NC_003521.1 + 34512 0.66 0.695699
Target:  5'- cGCAgGUaGCGGCcGCgGGCCGagaCGCgCg -3'
miRNA:   3'- uCGUgCA-CGCCGaUG-CCGGCg--GCGgG- -5'
14136 3' -63.3 NC_003521.1 + 72532 0.66 0.695699
Target:  5'- gAGCuGCGgagGCGGCggcgACGGUguCGUCGUCUc -3'
miRNA:   3'- -UCG-UGCa--CGCCGa---UGCCG--GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 140009 0.66 0.704978
Target:  5'- gGGCGagugguaGUcGCGGUaGCGGCCGCagaagGCCa -3'
miRNA:   3'- -UCGUg------CA-CGCCGaUGCCGGCGg----CGGg -5'
14136 3' -63.3 NC_003521.1 + 56980 0.66 0.676074
Target:  5'- uGCGCGagUGCaGGCUcuccucgAUGGCCGCgGUCa -3'
miRNA:   3'- uCGUGC--ACG-CCGA-------UGCCGGCGgCGGg -5'
14136 3' -63.3 NC_003521.1 + 145377 0.66 0.695699
Target:  5'- gGGCGCGaGcCGGUgcgcgACGGCCuggGCCuGCUCa -3'
miRNA:   3'- -UCGUGCaC-GCCGa----UGCCGG---CGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 213610 0.66 0.677012
Target:  5'- aGGC-UGuUGgGGUgGCGGUCGCCGCgCa -3'
miRNA:   3'- -UCGuGC-ACgCCGaUGCCGGCGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.